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The map label for this gene is lpsB [H]

Identifier: 134301747

GI number: 134301747

Start: 690234

End: 691298

Strand: Direct

Name: lpsB [H]

Synonym: FTW_0709

Alternate gene names: 134301747

Gene position: 690234-691298 (Clockwise)

Preceding gene: 134301744

Following gene: 134301749

Centisome position: 36.36

GC content: 32.68

Gene sequence:

>1065_bases
GTGGAAACTAAAAATATCAAAGATGTTGATGTTATAGCATTATCACTAGGACGTAGATTTTCTGGTATTAATGCTAGCAT
GTTAGCTGTTATACCAGAGCAAAATAAGTTAGTTGATATTGTTGCAATGGGTTTTAATATTGACTCTAAAGAAATTAGGA
AAATTAGATTTAGAGATTTTTTGTTTGGGTGTTGGCGTGATAAGTGGCGTATTTGGCATGCTCGTAGAAATATAGATATG
CTTATAGGCATAATATTAAAATATCTTTTTAGATACAAAATAATATTGGTTTTTACTTCTGTAGCTCAGAGGCATCATAA
AAAGCTTACAAAGTTTTATATAAATAGAATGGAGGCAGTTATATGCCCATCTGAAATATCAGCAAAGTATCTAGAGAAAA
AATCTTATATAGTGCCTCATGGAGTAGATACACAAGTTTTTTATCCTGCTGAAAATCGACAACAACAATGGCAAGATAAA
AAAATCCCTGGCAAATATGGGATAGGGATATTTGGTAGAATTAGGAAAACTAAAGGAACTCAAGAATTTATCGAGGCAGC
AATAGTAACTCTAAAAAAATATCCTGATTGGACAGCAGTAGTTATTGGTGAGGCAACTCCAAGAGATTTAGATTTTAAGA
AAGAGCTAGAGCAAAAAGTCAAACAAGCTGGATTAGATAAGCAGATAATTTTTATTGGTTTTATTGCTGATAGCAATGAG
ATTCCTAGTTGGTATAGAGCTTTAGATATTGTCGTTTGTGCTAGCCACAAAGAGGGCTTTGGTTTGCCAGCTCTTGAAGC
AATGGCTTCAAAATGCGCTGTAATTGCAACTAAAGCAGGTGCTTGGCCAGAAATTATCGTAGATGATGAAAATGGTTATT
TAGTTGAGCCTAAATCAAGCCAGCAGATTGCAGATAAATTAGATATGTTAATTTCTGATAGTAAATTAAGATACAAAATA
GCCCAAAATGGTTATGATTTGGTAACTACTAAATATAAGATTCAAAATGAAGCTGAAGGGATTCAACAAGTTTACGATAG
ACTTTTAGCTAAAAAAAGATCTTAA

Upstream 100 bases:

>100_bases
TAAGTGCTATTGTGATTTATCTATAAGTTTTGATTAGCTTGTAAATATTGTAAGTTTGTTTTAGTATGACACTAATAGAA
TATTTTAATATAAATAAATC

Downstream 100 bases:

>100_bases
CTAGGTGATAAGATTAGCCGATATATTATTATTTGGATAAGGTAACTTGTCTATATCGATAGCAAACTGCTTAGAATTAT
TTTGATCTAATGTATTTAAA

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
METKNIKDVDVIALSLGRRFSGINASMLAVIPEQNKLVDIVAMGFNIDSKEIRKIRFRDFLFGCWRDKWRIWHARRNIDM
LIGIILKYLFRYKIILVFTSVAQRHHKKLTKFYINRMEAVICPSEISAKYLEKKSYIVPHGVDTQVFYPAENRQQQWQDK
KIPGKYGIGIFGRIRKTKGTQEFIEAAIVTLKKYPDWTAVVIGEATPRDLDFKKELEQKVKQAGLDKQIIFIGFIADSNE
IPSWYRALDIVVCASHKEGFGLPALEAMASKCAVIATKAGAWPEIIVDDENGYLVEPKSSQQIADKLDMLISDSKLRYKI
AQNGYDLVTTKYKIQNEAEGIQQVYDRLLAKKRS

Sequences:

>Translated_354_residues
METKNIKDVDVIALSLGRRFSGINASMLAVIPEQNKLVDIVAMGFNIDSKEIRKIRFRDFLFGCWRDKWRIWHARRNIDM
LIGIILKYLFRYKIILVFTSVAQRHHKKLTKFYINRMEAVICPSEISAKYLEKKSYIVPHGVDTQVFYPAENRQQQWQDK
KIPGKYGIGIFGRIRKTKGTQEFIEAAIVTLKKYPDWTAVVIGEATPRDLDFKKELEQKVKQAGLDKQIIFIGFIADSNE
IPSWYRALDIVVCASHKEGFGLPALEAMASKCAVIATKAGAWPEIIVDDENGYLVEPKSSQQIADKLDMLISDSKLRYKI
AQNGYDLVTTKYKIQNEAEGIQQVYDRLLAKKRS
>Mature_354_residues
METKNIKDVDVIALSLGRRFSGINASMLAVIPEQNKLVDIVAMGFNIDSKEIRKIRFRDFLFGCWRDKWRIWHARRNIDM
LIGIILKYLFRYKIILVFTSVAQRHHKKLTKFYINRMEAVICPSEISAKYLEKKSYIVPHGVDTQVFYPAENRQQQWQDK
KIPGKYGIGIFGRIRKTKGTQEFIEAAIVTLKKYPDWTAVVIGEATPRDLDFKKELEQKVKQAGLDKQIIFIGFIADSNE
IPSWYRALDIVVCASHKEGFGLPALEAMASKCAVIATKAGAWPEIIVDDENGYLVEPKSSQQIADKLDMLISDSKLRYKI
AQNGYDLVTTKYKIQNEAEGIQQVYDRLLAKKRS

Specific function: Acts at transfer of mannose group to a 3-deoxy-D-mono octulonic acid (KDO) via an alpha-1,5 linkage [H]

COG id: COG0438

COG function: function code M; Glycosyltransferase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: NA

Molecular weight: Translated: 40674; Mature: 40674

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METKNIKDVDVIALSLGRRFSGINASMLAVIPEQNKLVDIVAMGFNIDSKEIRKIRFRDF
CCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHH
LFGCWRDKWRIWHARRNIDMLIGIILKYLFRYKIILVFTSVAQRHHKKLTKFYINRMEAV
HHHHHHHHHHEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
ICPSEISAKYLEKKSYIVPHGVDTQVFYPAENRQQQWQDKKIPGKYGIGIFGRIRKTKGT
ECCHHHHHHHHHCCCEECCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCCEEEEECCCCH
QEFIEAAIVTLKKYPDWTAVVIGEATPRDLDFKKELEQKVKQAGLDKQIIFIGFIADSNE
HHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCC
IPSWYRALDIVVCASHKEGFGLPALEAMASKCAVIATKAGAWPEIIVDDENGYLVEPKSS
CCHHHHHEEEEEEECCCCCCCCHHHHHHHHCCEEEEECCCCCCEEEEECCCCEEECCCCH
QQIADKLDMLISDSKLRYKIAQNGYDLVTTKYKIQNEAEGIQQVYDRLLAKKRS
HHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
METKNIKDVDVIALSLGRRFSGINASMLAVIPEQNKLVDIVAMGFNIDSKEIRKIRFRDF
CCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHH
LFGCWRDKWRIWHARRNIDMLIGIILKYLFRYKIILVFTSVAQRHHKKLTKFYINRMEAV
HHHHHHHHHHEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
ICPSEISAKYLEKKSYIVPHGVDTQVFYPAENRQQQWQDKKIPGKYGIGIFGRIRKTKGT
ECCHHHHHHHHHCCCEECCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCCEEEEECCCCH
QEFIEAAIVTLKKYPDWTAVVIGEATPRDLDFKKELEQKVKQAGLDKQIIFIGFIADSNE
HHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCC
IPSWYRALDIVVCASHKEGFGLPALEAMASKCAVIATKAGAWPEIIVDDENGYLVEPKSS
CCHHHHHEEEEEEECCCCCCCCHHHHHHHHCCEEEEECCCCCCEEEEECCCCEEECCCCH
QQIADKLDMLISDSKLRYKIAQNGYDLVTTKYKIQNEAEGIQQVYDRLLAKKRS
HHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11157937; 11481430 [H]