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The map label for this gene is yjjV [H]

Identifier: 134301719

GI number: 134301719

Start: 654689

End: 655435

Strand: Reverse

Name: yjjV [H]

Synonym: FTW_0674

Alternate gene names: 134301719

Gene position: 655435-654689 (Counterclockwise)

Preceding gene: 134301722

Following gene: 134301718

Centisome position: 34.52

GC content: 26.91

Gene sequence:

>747_bases
ATGTTTATTGATACACATTGTCACTTAGATTTTGATATTTTTGATAAAACTCGTCAAAACATACTACAAAACTGTAACAA
GCTAGGTGTTAACTATTTTATAAATCCTGCTACTCAAAGAAATAATTGGGATAAGCTAATACAAATAAATAGAGAGTTTA
GCAAAATTGTTATATGTTTTGGGTTACATCCTATATTTATTGATAAGCATATTCATACTGATTTAAAAGATTTAGAGTTA
TATAGCCAAAAGCATCCAACAAAACTTATTGGTGAAATTGGTCTAGATAAAAGATTTAAAAACTTCAACAAACAACTAGA
GTTTTTCTCAGCACAAATTAATATAGCTAAAAACCTTGATAAACAAGTAATTATCCATGCTGTAAAATCACATAATGAGG
TAATAAAAGTTATTAAAGACTTAAAATTTCAAAACGGTGGAATTATCCATGCTTTTAATGCTAATTATGATATTGCACAG
AAATATATAGATCTGGGTTTTAAATTAGGTATTGGCGCAATAATTTCTCAACCACAAGCAAAACTTAAACAAGCTCTAGC
AAAAATTAAGCCAGAAAATATTGTTTTGGAAACAGACTCTCCAGATATGTTGCTTTATAACAGTACTGACAATATTAATA
CTCCAGAAAATATCCCTAAGATTTTTGAGTTATTAAGCAATATTTATCAACTAAATCCTGATATACTAAAACAACAAATT
TATAATACTAGCTTAGAATTTATCTAG

Upstream 100 bases:

>100_bases
TGAGATCCTCAAACAAGTTCAGGATGACGAAAAAGTATTATTCTCATAAATATTGAGCTATATTATAACTTAATAACCCA
AAGAATTTAACTAGACATCG

Downstream 100 bases:

>100_bases
AAAATGTATATATCTAACTTACGCTTACAAAATTTTAGAAATATACCTGCTAAAAGCTTTGATTTTAAAAATAGTATAAA
TTTTATAGTTGGTAAAAATG

Product: tatD family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MFIDTHCHLDFDIFDKTRQNILQNCNKLGVNYFINPATQRNNWDKLIQINREFSKIVICFGLHPIFIDKHIHTDLKDLEL
YSQKHPTKLIGEIGLDKRFKNFNKQLEFFSAQINIAKNLDKQVIIHAVKSHNEVIKVIKDLKFQNGGIIHAFNANYDIAQ
KYIDLGFKLGIGAIISQPQAKLKQALAKIKPENIVLETDSPDMLLYNSTDNINTPENIPKIFELLSNIYQLNPDILKQQI
YNTSLEFI

Sequences:

>Translated_248_residues
MFIDTHCHLDFDIFDKTRQNILQNCNKLGVNYFINPATQRNNWDKLIQINREFSKIVICFGLHPIFIDKHIHTDLKDLEL
YSQKHPTKLIGEIGLDKRFKNFNKQLEFFSAQINIAKNLDKQVIIHAVKSHNEVIKVIKDLKFQNGGIIHAFNANYDIAQ
KYIDLGFKLGIGAIISQPQAKLKQALAKIKPENIVLETDSPDMLLYNSTDNINTPENIPKIFELLSNIYQLNPDILKQQI
YNTSLEFI
>Mature_248_residues
MFIDTHCHLDFDIFDKTRQNILQNCNKLGVNYFINPATQRNNWDKLIQINREFSKIVICFGLHPIFIDKHIHTDLKDLEL
YSQKHPTKLIGEIGLDKRFKNFNKQLEFFSAQINIAKNLDKQVIIHAVKSHNEVIKVIKDLKFQNGGIIHAFNANYDIAQ
KYIDLGFKLGIGAIISQPQAKLKQALAKIKPENIVLETDSPDMLLYNSTDNINTPENIPKIFELLSNIYQLNPDILKQQI
YNTSLEFI

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=219, Percent_Identity=28.310502283105, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI110349734, Length=218, Percent_Identity=27.5229357798165, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI226061595, Length=223, Percent_Identity=27.3542600896861, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI226061853, Length=223, Percent_Identity=27.3542600896861, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI226061614, Length=209, Percent_Identity=26.3157894736842, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI87082439, Length=248, Percent_Identity=31.0483870967742, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1787342, Length=244, Percent_Identity=24.5901639344262, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI48994985, Length=224, Percent_Identity=24.5535714285714, Blast_Score=70, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17559024, Length=217, Percent_Identity=24.4239631336406, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 28720; Mature: 28720

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: PS01137 TATD_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIDTHCHLDFDIFDKTRQNILQNCNKLGVNYFINPATQRNNWDKLIQINREFSKIVICF
CEECCEEEEEHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHCCHHHHEEEEE
GLHPIFIDKHIHTDLKDLELYSQKHPTKLIGEIGLDKRFKNFNKQLEFFSAQINIAKNLD
ECCEEEECCHHCCCHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC
KQVIIHAVKSHNEVIKVIKDLKFQNGGIIHAFNANYDIAQKYIDLGFKLGIGAIISQPQA
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHCHHHHHCCCHH
KLKQALAKIKPENIVLETDSPDMLLYNSTDNINTPENIPKIFELLSNIYQLNPDILKQQI
HHHHHHHHCCCCCEEEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH
YNTSLEFI
HHHCCCCC
>Mature Secondary Structure
MFIDTHCHLDFDIFDKTRQNILQNCNKLGVNYFINPATQRNNWDKLIQINREFSKIVICF
CEECCEEEEEHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHCCHHHHEEEEE
GLHPIFIDKHIHTDLKDLELYSQKHPTKLIGEIGLDKRFKNFNKQLEFFSAQINIAKNLD
ECCEEEECCHHCCCHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC
KQVIIHAVKSHNEVIKVIKDLKFQNGGIIHAFNANYDIAQKYIDLGFKLGIGAIISQPQA
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHCHHHHHCCCHH
KLKQALAKIKPENIVLETDSPDMLLYNSTDNINTPENIPKIFELLSNIYQLNPDILKQQI
HHHHHHHHCCCCCEEEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH
YNTSLEFI
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]