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The map label for this gene is ltrA [H]

Identifier: 134301616

GI number: 134301616

Start: 554004

End: 554894

Strand: Direct

Name: ltrA [H]

Synonym: FTW_0555

Alternate gene names: 134301616

Gene position: 554004-554894 (Clockwise)

Preceding gene: 134301600

Following gene: 134301617

Centisome position: 29.18

GC content: 29.63

Gene sequence:

>891_bases
ATGAATTTTGATGATATTTTCCTTTTTGTTAAGCTTGTTAATATTGGAACATTTACCGAATTAGCAAAACAGTTAAATGT
TTCTCAGAGCACAGTTTCACGGAGGATTCAAAGTTTAGAAGAATCTATTAATACTAAGTTGATAAAGAGAAATTCAAGAG
GTGTTATCGAAGTAACCACAGAAGGACAATCTCTATATAACAATTTTAGTTATATTGAAGAACAAGCTGTTGTGACATTT
CAAAAGTGGATTAATAATTCAAAACAAATCAAAGGTATTTTAAGAGTGGGAGTACCAAAGTTGTTTTTTGATAACCTTGT
TGCTCCAAAGCTTGATACATTTTATACACGCTATCCTAATGTACAATTAGTATTTAGTTATACTGCTGGAATTGTTGATT
TAGTAAAAGATAATATAGACATAGCGATTACAACAAAAAAACCAACAACGAATAATTGCACTATAAAAACACTTCTTAAA
TCCAAGAATAAGCTTTATGCGTCTAAAAAATATATTCAAGAAAAAGGGGTTCCTGAGACAATAAAGGAATTAGAAAATCA
TAGTATTGTCGGCTTCATAGATAACGATAAATGTCAGAATGCTCTGGTAGGCTTTTCAGAGCTAGATAATTCCAGTCTAG
AAGTTAATATTAGTCCAGATTTGTTCCTTAATAATGCTATCTATGATATCAACTTGGCAACTAAGTGTAATAGAATTATT
AATGTTTTAGATATATTTGCTAATGATAAAGCAGATATAGAGCCAGTTTTGAATGAATACTATTTTGGCAAAACAAGCTT
CTATTTAGTACGTGCTACGGGAGTACGTAGTAATTTAGAACGAGAATTTGTTAAGTTTATTGATGTATGTTTGCAAGATA
AATCTTTTTAA

Upstream 100 bases:

>100_bases
AAAATTAGTCAATTAACTTACGCTAATAGTATATTTGTAGTAGTATTAATTTGTCTGTAGCAAAAAATGCATAACTATTA
TGCGTAAATAGAGGACCACT

Downstream 100 bases:

>100_bases
TTATTTTTAGTGGATTTTTAGTGGGTCTAAAATGAGTATGAGAAAAATATTAATAATTTTAGTTGTGTTGATCTATACAA
ACTCCTATGCAATTGTGGCT

Product: transcriptional regulator, LysR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MNFDDIFLFVKLVNIGTFTELAKQLNVSQSTVSRRIQSLEESINTKLIKRNSRGVIEVTTEGQSLYNNFSYIEEQAVVTF
QKWINNSKQIKGILRVGVPKLFFDNLVAPKLDTFYTRYPNVQLVFSYTAGIVDLVKDNIDIAITTKKPTTNNCTIKTLLK
SKNKLYASKKYIQEKGVPETIKELENHSIVGFIDNDKCQNALVGFSELDNSSLEVNISPDLFLNNAIYDINLATKCNRII
NVLDIFANDKADIEPVLNEYYFGKTSFYLVRATGVRSNLEREFVKFIDVCLQDKSF

Sequences:

>Translated_296_residues
MNFDDIFLFVKLVNIGTFTELAKQLNVSQSTVSRRIQSLEESINTKLIKRNSRGVIEVTTEGQSLYNNFSYIEEQAVVTF
QKWINNSKQIKGILRVGVPKLFFDNLVAPKLDTFYTRYPNVQLVFSYTAGIVDLVKDNIDIAITTKKPTTNNCTIKTLLK
SKNKLYASKKYIQEKGVPETIKELENHSIVGFIDNDKCQNALVGFSELDNSSLEVNISPDLFLNNAIYDINLATKCNRII
NVLDIFANDKADIEPVLNEYYFGKTSFYLVRATGVRSNLEREFVKFIDVCLQDKSF
>Mature_296_residues
MNFDDIFLFVKLVNIGTFTELAKQLNVSQSTVSRRIQSLEESINTKLIKRNSRGVIEVTTEGQSLYNNFSYIEEQAVVTF
QKWINNSKQIKGILRVGVPKLFFDNLVAPKLDTFYTRYPNVQLVFSYTAGIVDLVKDNIDIAITTKKPTTNNCTIKTLLK
SKNKLYASKKYIQEKGVPETIKELENHSIVGFIDNDKCQNALVGFSELDNSSLEVNISPDLFLNNAIYDINLATKCNRII
NVLDIFANDKADIEPVLNEYYFGKTSFYLVRATGVRSNLEREFVKFIDVCLQDKSF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=191, Percent_Identity=27.7486910994764, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789440, Length=301, Percent_Identity=27.2425249169435, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI145693193, Length=195, Percent_Identity=27.6923076923077, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1789639, Length=182, Percent_Identity=27.4725274725275, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87081978, Length=183, Percent_Identity=28.9617486338798, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788297, Length=164, Percent_Identity=26.219512195122, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789173, Length=127, Percent_Identity=30.7086614173228, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33753; Mature: 33753

Theoretical pI: Translated: 8.26; Mature: 8.26

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFDDIFLFVKLVNIGTFTELAKQLNVSQSTVSRRIQSLEESINTKLIKRNSRGVIEVTT
CCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEE
EGQSLYNNFSYIEEQAVVTFQKWINNSKQIKGILRVGVPKLFFDNLVAPKLDTFYTRYPN
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHCCCCCHHHHHHCCCC
VQLVFSYTAGIVDLVKDNIDIAITTKKPTTNNCTIKTLLKSKNKLYASKKYIQEKGVPET
EEEEEEHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHCCHHHHHHHHHHHHCCCHHH
IKELENHSIVGFIDNDKCQNALVGFSELDNSSLEVNISPDLFLNNAIYDINLATKCNRII
HHHHCCCCEEEEECCCHHHHHHHCHHHCCCCCEEEEECCCEEECCEEEEEEHHHHHHHHH
NVLDIFANDKADIEPVLNEYYFGKTSFYLVRATGVRSNLEREFVKFIDVCLQDKSF
HHHHHHCCCCCCHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNFDDIFLFVKLVNIGTFTELAKQLNVSQSTVSRRIQSLEESINTKLIKRNSRGVIEVTT
CCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEE
EGQSLYNNFSYIEEQAVVTFQKWINNSKQIKGILRVGVPKLFFDNLVAPKLDTFYTRYPN
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHCCCCCHHHHHHCCCC
VQLVFSYTAGIVDLVKDNIDIAITTKKPTTNNCTIKTLLKSKNKLYASKKYIQEKGVPET
EEEEEEHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHCCHHHHHHHHHHHHCCCHHH
IKELENHSIVGFIDNDKCQNALVGFSELDNSSLEVNISPDLFLNNAIYDINLATKCNRII
HHHHCCCCEEEEECCCHHHHHHHCHHHCCCCCEEEEECCCEEECCEEEEEEHHHHHHHHH
NVLDIFANDKADIEPVLNEYYFGKTSFYLVRATGVRSNLEREFVKFIDVCLQDKSF
HHHHHHCCCCCCHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]