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The map label for this gene is nusB [H]

Identifier: 134301537

GI number: 134301537

Start: 455872

End: 456297

Strand: Direct

Name: nusB [H]

Synonym: FTW_0466

Alternate gene names: 134301537

Gene position: 455872-456297 (Clockwise)

Preceding gene: 134301532

Following gene: 134301539

Centisome position: 24.01

GC content: 33.57

Gene sequence:

>426_bases
ATGAAAACTACCGCTAGAGCTCGAAATAATGCTCGTTTATATGCCGTACAAGCTTTGTACCAAAAGAAAATCGCTGATAA
TACATTCTCTGAGCTTAAGATTCAGTACTATGCTGATAATGCTGATAGGCATTATACTGATTGGGATCTTTTCTATAGAC
TTATAGATGCAGTTAAGACAAATCAAGACACTATAGACAAATATATCAAAGAAAACTCAAGTAATGGTGTTGAATCAATC
AATTATGTTGACTATGCAGTATTGCAAGTAGCTATAGCAGAACTGATAGAGTGTCTTGAGAATCCATATCAAGTGATTAT
AAAAGAGTATGTTGAGATATGTTACAGCATGGGTACTGAAGAAGGTTATAAGTTTATTAATGCAGTATTGCAAAATCTAG
CTAAGTCGATTAGAGGTGAAGAGTAA

Upstream 100 bases:

>100_bases
TTTAGTAGTATTAAAGTTCATAAGAACTATATATATTATTGTTAATAAGGTATAATCACAAGCTATAAAATTCGCTAATC
AATTACATCTACATAAAATT

Downstream 100 bases:

>100_bases
ATTTATCTTGAGATGCAAGAAAATTAAACTTGCTACGATGTTGTAATTGTTTATTTTTATCCAAAGTTGCACTTAAAGTA
GCTTGTTTGAATTCTTGATG

Product: transcription antitermination factor NusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MKTTARARNNARLYAVQALYQKKIADNTFSELKIQYYADNADRHYTDWDLFYRLIDAVKTNQDTIDKYIKENSSNGVESI
NYVDYAVLQVAIAELIECLENPYQVIIKEYVEICYSMGTEEGYKFINAVLQNLAKSIRGEE

Sequences:

>Translated_141_residues
MKTTARARNNARLYAVQALYQKKIADNTFSELKIQYYADNADRHYTDWDLFYRLIDAVKTNQDTIDKYIKENSSNGVESI
NYVDYAVLQVAIAELIECLENPYQVIIKEYVEICYSMGTEEGYKFINAVLQNLAKSIRGEE
>Mature_141_residues
MKTTARARNNARLYAVQALYQKKIADNTFSELKIQYYADNADRHYTDWDLFYRLIDAVKTNQDTIDKYIKENSSNGVESI
NYVDYAVLQVAIAELIECLENPYQVIIKEYVEICYSMGTEEGYKFINAVLQNLAKSIRGEE

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

Organism=Escherichia coli, GI1786618, Length=124, Percent_Identity=35.4838709677419, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 16375; Mature: 16375

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTTARARNNARLYAVQALYQKKIADNTFSELKIQYYADNADRHYTDWDLFYRLIDAVKT
CCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHC
NQDTIDKYIKENSSNGVESINYVDYAVLQVAIAELIECLENPYQVIIKEYVEICYSMGTE
CHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
EGYKFINAVLQNLAKSIRGEE
HHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKTTARARNNARLYAVQALYQKKIADNTFSELKIQYYADNADRHYTDWDLFYRLIDAVKT
CCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHC
NQDTIDKYIKENSSNGVESINYVDYAVLQVAIAELIECLENPYQVIIKEYVEICYSMGTE
CHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
EGYKFINAVLQNLAKSIRGEE
HHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA