Click here to switch to the map view.

The map label for this gene is qseB [H]

Identifier: 134301461

GI number: 134301461

Start: 364899

End: 365585

Strand: Direct

Name: qseB [H]

Synonym: FTW_0370

Alternate gene names: 134301461

Gene position: 364899-365585 (Clockwise)

Preceding gene: 134301460

Following gene: 134301462

Centisome position: 19.22

GC content: 32.02

Gene sequence:

>687_bases
ATGAGAATATTGTTGGCTGAAGATGATCTTCATTTGGGTGAAGGCTTATTAGAAGCTTTGCAAAAAGAGGGTTTGATTGT
AAATCTAGTTTCAGATGGTGAGGCAGCGCAAACTTTTATAGAATCTGGATTGTATGATATAGTCGTCTTAGATATTGGTA
TGCCAATAAAAACTGGTTTAGAAGTTCTAAGAAATATTAGAAATAGAGGTATTAAAGTACCAATAATACTGTTGACTGCT
AGAGATGGTTTAGAAGATAGAATTAAAGGTCTTGATCTTGGTGCTGATGATTATCTAACTAAGCCATTTGAGTTAAAAGA
GCTAGTAGCTAGAATTAAAGCTATTTCTCGTCGTATTGATACTAGATCTGGTAAAAGTGTTAATGAAGAAATTAGATTTG
GAGATTATAGTTTTAATCCAAGCTCTGAAACGGTAACCAAAGATGGAGTTATTATTCCTGTTTCAAAAAAAGAGTTAGCG
CTTTTAGCTATATTGGTACAAAATGCTGGTAGGGTAGTACCAAAGACACAGCTTTTAGAAGAAGTATATTCTACTGATAA
GGAAATGGATACAAACACCCTAGAAGTACATATGCATAATTTAAGAAAGAAAATTAACATTCCTAATTTTATACAGACTA
TTAGAGGTGTTGGTTACTTTGTACAAAAGGATAAAGTAATTAAGTAA

Upstream 100 bases:

>100_bases
TTATCTAGGATGACCCTAAATAAATATTTATTTTATACACCTTATTGTATATAATTGGATTAATGATACAGAATACTACT
TTAAATAGCAAGGGTTAATT

Downstream 100 bases:

>100_bases
CTTCATGGAAATCTTAAACTATATTTTAAACTTGGGCTTTACTTTTTGGCTTTTATTCTTAACCATTGCCAGTGGTTTAA
TTTATATTATTGATTTTGTG

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MRILLAEDDLHLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIKTGLEVLRNIRNRGIKVPIILLTA
RDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRIDTRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELA
LLAILVQNAGRVVPKTQLLEEVYSTDKEMDTNTLEVHMHNLRKKINIPNFIQTIRGVGYFVQKDKVIK

Sequences:

>Translated_228_residues
MRILLAEDDLHLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIKTGLEVLRNIRNRGIKVPIILLTA
RDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRIDTRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELA
LLAILVQNAGRVVPKTQLLEEVYSTDKEMDTNTLEVHMHNLRKKINIPNFIQTIRGVGYFVQKDKVIK
>Mature_228_residues
MRILLAEDDLHLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIKTGLEVLRNIRNRGIKVPIILLTA
RDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRIDTRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELA
LLAILVQNAGRVVPKTQLLEEVYSTDKEMDTNTLEVHMHNLRKKINIPNFIQTIRGVGYFVQKDKVIK

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC. Currently it is not known whether this effect is direct or not [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=219, Percent_Identity=41.5525114155251, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI1790552, Length=221, Percent_Identity=43.8914027149321, Blast_Score=170, Evalue=6e-44,
Organism=Escherichia coli, GI87082012, Length=222, Percent_Identity=35.1351351351351, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI1786784, Length=227, Percent_Identity=37.0044052863436, Blast_Score=151, Evalue=3e-38,
Organism=Escherichia coli, GI1786599, Length=223, Percent_Identity=34.0807174887892, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1787375, Length=225, Percent_Identity=32, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1790860, Length=221, Percent_Identity=30.7692307692308, Blast_Score=120, Evalue=5e-29,
Organism=Escherichia coli, GI1787229, Length=226, Percent_Identity=34.070796460177, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1789809, Length=230, Percent_Identity=30.4347826086957, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI2367329, Length=230, Percent_Identity=35.6521739130435, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1788394, Length=229, Percent_Identity=30.1310043668122, Blast_Score=114, Evalue=4e-27,
Organism=Escherichia coli, GI1786911, Length=224, Percent_Identity=31.25, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1790863, Length=228, Percent_Identity=30.2631578947368, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI145693140, Length=230, Percent_Identity=26.9565217391304, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1788550, Length=107, Percent_Identity=32.7102803738318, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1790299, Length=127, Percent_Identity=30.7086614173228, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 25506; Mature: 25506

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILLAEDDLHLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIKTGL
CEEEEECCCCHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHCCCEEEEEEECCCCHHHHH
EVLRNIRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID
HHHHHHHHCCCEEEEEEEECCCCHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHC
TRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE
CCCCCCCCHHHEECCCCCCCCCCCEECCCEEEEECHHHHHHHHHHHHHCCCCCCHHHHHH
EVYSTDKEMDTNTLEVHMHNLRKKINIPNFIQTIRGVGYFVQKDKVIK
HHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCEECCCCCCC
>Mature Secondary Structure
MRILLAEDDLHLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIKTGL
CEEEEECCCCHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHCCCEEEEEEECCCCHHHHH
EVLRNIRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID
HHHHHHHHCCCEEEEEEEECCCCHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHC
TRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE
CCCCCCCCHHHEECCCCCCCCCCCEECCCEEEEECHHHHHHHHHHHHHCCCCCCHHHHHH
EVYSTDKEMDTNTLEVHMHNLRKKINIPNFIQTIRGVGYFVQKDKVIK
HHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796; 11929534 [H]