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The map label for this gene is rimM [H]

Identifier: 134301360

GI number: 134301360

Start: 252351

End: 252860

Strand: Direct

Name: rimM [H]

Synonym: FTW_0241

Alternate gene names: 134301360

Gene position: 252351-252860 (Clockwise)

Preceding gene: 134301359

Following gene: 134301361

Centisome position: 13.29

GC content: 31.57

Gene sequence:

>510_bases
ATGTCACAGGATTTTGTAGAAATAGCCAAAATTGGCGCTACTTATAAGCTTAATGGTGAGCTTAATTTATATTCTTTGGC
AAATTCAATAGAAACACTTCTAAGTTATGGTGATTGGTATATCCAATTACCAGCGACTAATGTTTGGCAACAGCTCAAAG
GTGAAAGTGTACTAAAGAGGGCTGATAAAGTTTATATTAAACTTGCTAACATTAACAATGCTGATACTGCTAAGAAATAT
GTAAATGCACTGATTGGTGTGCCAAAGCGAGCATTGCCACAGCTAGCAGAGGATGAAGTGTATTTTAAAGATTTAATTGG
TTGTAGTGTCAAAAATATTAACAATGATTCATTTGGTGTTGTTGTAGATATTATTGAAACTGGTGCTAATGAAGTTTTGG
TATGTAAAGAAGATAATAGTGAATATTTGATTCCTTATGTTAAGCAATATATTGTTAGTGAAGATCTTAATTCTAAAAAG
ATAGTTGTTGATTGGGAATACGATTATTAA

Upstream 100 bases:

>100_bases
TGCACAACCTTCTGATAGAGTAGCAAGCTTAATCAAAGAAGCTAAGAAAGCCGCTTAATATACTTTTATTTTTTTATTTA
ATAAATAAAGTTTATCTTCT

Downstream 100 bases:

>100_bases
TTTGGATTTATAAATATTTTTATAAAATCATATATTAATTCTTATGCTAAGACCATTTGTTTAAATAAATTTCGCAGCTT
ACCTTCTAAGTTGATGCGAC

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MSQDFVEIAKIGATYKLNGELNLYSLANSIETLLSYGDWYIQLPATNVWQQLKGESVLKRADKVYIKLANINNADTAKKY
VNALIGVPKRALPQLAEDEVYFKDLIGCSVKNINNDSFGVVVDIIETGANEVLVCKEDNSEYLIPYVKQYIVSEDLNSKK
IVVDWEYDY

Sequences:

>Translated_169_residues
MSQDFVEIAKIGATYKLNGELNLYSLANSIETLLSYGDWYIQLPATNVWQQLKGESVLKRADKVYIKLANINNADTAKKY
VNALIGVPKRALPQLAEDEVYFKDLIGCSVKNINNDSFGVVVDIIETGANEVLVCKEDNSEYLIPYVKQYIVSEDLNSKK
IVVDWEYDY
>Mature_168_residues
SQDFVEIAKIGATYKLNGELNLYSLANSIETLLSYGDWYIQLPATNVWQQLKGESVLKRADKVYIKLANINNADTAKKYV
NALIGVPKRALPQLAEDEVYFKDLIGCSVKNINNDSFGVVVDIIETGANEVLVCKEDNSEYLIPYVKQYIVSEDLNSKKI
VVDWEYDY

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=173, Percent_Identity=33.5260115606936, Blast_Score=102, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 19113; Mature: 18982

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQDFVEIAKIGATYKLNGELNLYSLANSIETLLSYGDWYIQLPATNVWQQLKGESVLKR
CCCHHHHHHHCCCEEEECCCEEHHHHHHHHHHHHHCCCEEEECCCHHHHHHHCCHHHHHH
ADKVYIKLANINNADTAKKYVNALIGVPKRALPQLAEDEVYFKDLIGCSVKNINNDSFGV
CCEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHCCEECCCCCCCCEE
VVDIIETGANEVLVCKEDNSEYLIPYVKQYIVSEDLNSKKIVVDWEYDY
EEEEECCCCCEEEEEEECCCCEEHHHHHHHHHHCCCCCCEEEEEEECCC
>Mature Secondary Structure 
SQDFVEIAKIGATYKLNGELNLYSLANSIETLLSYGDWYIQLPATNVWQQLKGESVLKR
CCHHHHHHHCCCEEEECCCEEHHHHHHHHHHHHHCCCEEEECCCHHHHHHHCCHHHHHH
ADKVYIKLANINNADTAKKYVNALIGVPKRALPQLAEDEVYFKDLIGCSVKNINNDSFGV
CCEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHCCEECCCCCCCCEE
VVDIIETGANEVLVCKEDNSEYLIPYVKQYIVSEDLNSKKIVVDWEYDY
EEEEECCCCCEEEEEEECCCCEEHHHHHHHHHHCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA