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The map label for this gene is rbfA

Identifier: 134301265

GI number: 134301265

Start: 138144

End: 138575

Strand: Direct

Name: rbfA

Synonym: FTW_0127

Alternate gene names: 134301265

Gene position: 138144-138575 (Clockwise)

Preceding gene: 134301264

Following gene: 134301266

Centisome position: 7.28

GC content: 32.41

Gene sequence:

>432_bases
ATGGCTGCAGAGGGTAGAGTACAAAGAGTAGCGAGTGAGTTTCAAAAAGTTATATCTTTATTACTGCGTACTAGAATAAA
AGATGCTAAGCTAGCTAGTGCAACTATTACAGAAGTGGATCTTTCTAAGGATCTATCTTATGCAAAAATATATTATACTT
GCTTAGCTATTGAGGATGCTGAATATATTGACAAAGCATTTGAAAAATCAAAAGGTTTCTTTAGATCATCTATAGCTAAG
TCATTAAGTCTACGAATTGTTCCAAATCTTAAGTTTATATATGACACTTCGCTTGATTATGGTATGCAGATGGAAGAAAA
AATCCAGCAGGCACTTGAAGCTGACTCAAAAATTATCAAGCAAGATGATAAATCTTTACAAGAAAATTATAAGCAAAACG
ATAAAGAAACTAAAGCTGAGAAGTTAAGGTAG

Upstream 100 bases:

>100_bases
TTAAAAAAGGCTTAGAGTGTGGTATTGGTGTCAAAAACTATAATGATGTCCGTGAGGGTGACCAAATAGAGGTATTTGAG
GTTGCTAAGGAGTTGTAATT

Downstream 100 bases:

>100_bases
GTAGCTTATGAGTAAGCTTACTATTGTTCGTGGATTTAATGATGTATTGCCACTAGACAGTTATAAATGGCAACTCTTGG
AATCAAAAGTAAAACTCATA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MAAEGRVQRVASEFQKVISLLLRTRIKDAKLASATITEVDLSKDLSYAKIYYTCLAIEDAEYIDKAFEKSKGFFRSSIAK
SLSLRIVPNLKFIYDTSLDYGMQMEEKIQQALEADSKIIKQDDKSLQENYKQNDKETKAEKLR

Sequences:

>Translated_143_residues
MAAEGRVQRVASEFQKVISLLLRTRIKDAKLASATITEVDLSKDLSYAKIYYTCLAIEDAEYIDKAFEKSKGFFRSSIAK
SLSLRIVPNLKFIYDTSLDYGMQMEEKIQQALEADSKIIKQDDKSLQENYKQNDKETKAEKLR
>Mature_142_residues
AAEGRVQRVASEFQKVISLLLRTRIKDAKLASATITEVDLSKDLSYAKIYYTCLAIEDAEYIDKAFEKSKGFFRSSIAKS
LSLRIVPNLKFIYDTSLDYGMQMEEKIQQALEADSKIIKQDDKSLQENYKQNDKETKAEKLR

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=129, Percent_Identity=42.6356589147287, Blast_Score=96, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_FRAT1 (Q14K19)

Other databases:

- EMBL:   AM286280
- RefSeq:   YP_666257.1
- ProteinModelPortal:   Q14K19
- SMR:   Q14K19
- STRING:   Q14K19
- GeneID:   4200596
- GenomeReviews:   AM286280_GR
- KEGG:   ftf:FTF0051
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- PhylomeDB:   Q14K19
- ProtClustDB:   CLSK934348
- BioCyc:   FTUL393115:FTF0051-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 16416; Mature: 16285

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAEGRVQRVASEFQKVISLLLRTRIKDAKLASATITEVDLSKDLSYAKIYYTCLAIEDA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCH
EYIDKAFEKSKGFFRSSIAKSLSLRIVPNLKFIYDTSLDYGMQMEEKIQQALEADSKIIK
HHHHHHHHHHCCHHHHHHHHHHHHEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
QDDKSLQENYKQNDKETKAEKLR
HHHHHHHHHHHCCCHHHHHHHCC
>Mature Secondary Structure 
AAEGRVQRVASEFQKVISLLLRTRIKDAKLASATITEVDLSKDLSYAKIYYTCLAIEDA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCH
EYIDKAFEKSKGFFRSSIAKSLSLRIVPNLKFIYDTSLDYGMQMEEKIQQALEADSKIIK
HHHHHHHHHHCCHHHHHHHHHHHHEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
QDDKSLQENYKQNDKETKAEKLR
HHHHHHHHHHHCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA