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The map label for this gene is ybaF [H]

Identifier: 134300512

GI number: 134300512

Start: 2899541

End: 2900404

Strand: Reverse

Name: ybaF [H]

Synonym: Dred_2677

Alternate gene names: 134300512

Gene position: 2900404-2899541 (Counterclockwise)

Preceding gene: 134300513

Following gene: 134300511

Centisome position: 80.39

GC content: 49.07

Gene sequence:

>864_bases
GTGAGTTATTTCCTTTGCATGCTTATTCTCATCATGCTCCTGGACCATCCCGTATTTTTGGTAGGCACGCTCTGTTTGTC
AGCCACCATGGCCCAGGGGCTTAGAAGCGTCGAAGACTGGAATAATTATATGCGGCTTGGCCTGATGATGAGTGTCATTG
TGCTGTTTGTCAACCCGCTTTTTGTCAGAGCAGGGGAAACTATCCTCTGGTGGGGGCCAAAACTACCCTTGTTGGGACAC
ATGTTCATAACTTTGGAGGCCATCTGTTATGGAGCTGCCATGAGTTTAAAATTGTTAAATGCCTTTAGTTTATTTTTTCT
CTTTAGTCGTATGGTTCATCCCGATCAGATTCTCTCTCTGTTTTCAGGGACTCTTTTTCGCTCCGCCTTGGTGCTATCTT
TGGCCACCCGTTTGTTTCCCACCGTGGCCCAAAGGCTGAAGAGTATCCAGGAAATCCAGCGACTGAGGGGTGTCCAATTT
GAACAGGGATCCCGACGGGAACGGCTAGGCAAGTATGGTGGTCTGGTGGAAACTCTATTGTATTCGTCTTTGGAAGACGC
ATTGGAGACGGCGGAAGCCATGGAGGCCCGAGGGTTTAACAGTGGTCCCCGCACCCGCTACCGCCGGGATCTTTGGCGGC
CCCGGGATAGTATCTGCCTGACCGGTATATTTATCGTCTTGGCGGTGTTCCTCTATGGAATTTGGGAAGGCAGCTTGCTT
TTTACTTTTTATCCGGCACTGGATCCCCTGCTGATGGACAAAAAGGGGCTGGGGATATTCATAGCCTTGTTTTCAGGACT
TTCTGTACCAATGCTCTTAAATTGGGGGTGGAACCGATGGCCATCTTTACGATCAAAAATTTGA

Upstream 100 bases:

>100_bases
CAGGCGGTTATTATCCGTCCTTGAGGAAAAACATATGGGGAATGGGGAAAACACCTTTACTTTAACGCCGCTGTTAACCC
GCTTTCATCCGGGAGTTGCA

Downstream 100 bases:

>100_bases
TGTATTGTTACCCGGATTCCCAGCAACCGGCTCTGGATCAAATCAATTTGAACATAGAGGAAGGTGAGTTCGTACTGGTT
TTGGGTGGATCGGGGTCTGG

Product: cobalt transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MSYFLCMLILIMLLDHPVFLVGTLCLSATMAQGLRSVEDWNNYMRLGLMMSVIVLFVNPLFVRAGETILWWGPKLPLLGH
MFITLEAICYGAAMSLKLLNAFSLFFLFSRMVHPDQILSLFSGTLFRSALVLSLATRLFPTVAQRLKSIQEIQRLRGVQF
EQGSRRERLGKYGGLVETLLYSSLEDALETAEAMEARGFNSGPRTRYRRDLWRPRDSICLTGIFIVLAVFLYGIWEGSLL
FTFYPALDPLLMDKKGLGIFIALFSGLSVPMLLNWGWNRWPSLRSKI

Sequences:

>Translated_287_residues
MSYFLCMLILIMLLDHPVFLVGTLCLSATMAQGLRSVEDWNNYMRLGLMMSVIVLFVNPLFVRAGETILWWGPKLPLLGH
MFITLEAICYGAAMSLKLLNAFSLFFLFSRMVHPDQILSLFSGTLFRSALVLSLATRLFPTVAQRLKSIQEIQRLRGVQF
EQGSRRERLGKYGGLVETLLYSSLEDALETAEAMEARGFNSGPRTRYRRDLWRPRDSICLTGIFIVLAVFLYGIWEGSLL
FTFYPALDPLLMDKKGLGIFIALFSGLSVPMLLNWGWNRWPSLRSKI
>Mature_286_residues
SYFLCMLILIMLLDHPVFLVGTLCLSATMAQGLRSVEDWNNYMRLGLMMSVIVLFVNPLFVRAGETILWWGPKLPLLGHM
FITLEAICYGAAMSLKLLNAFSLFFLFSRMVHPDQILSLFSGTLFRSALVLSLATRLFPTVAQRLKSIQEIQRLRGVQFE
QGSRRERLGKYGGLVETLLYSSLEDALETAEAMEARGFNSGPRTRYRRDLWRPRDSICLTGIFIVLAVFLYGIWEGSLLF
TFYPALDPLLMDKKGLGIFIALFSGLSVPMLLNWGWNRWPSLRSKI

Specific function: Unknown

COG id: COG0619

COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003339 [H]

Pfam domain/function: PF02361 CbiQ [H]

EC number: NA

Molecular weight: Translated: 32682; Mature: 32551

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYFLCMLILIMLLDHPVFLVGTLCLSATMAQGLRSVEDWNNYMRLGLMMSVIVLFVNPL
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVRAGETILWWGPKLPLLGHMFITLEAICYGAAMSLKLLNAFSLFFLFSRMVHPDQILSL
HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
FSGTLFRSALVLSLATRLFPTVAQRLKSIQEIQRLRGVQFEQGSRRERLGKYGGLVETLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
YSSLEDALETAEAMEARGFNSGPRTRYRRDLWRPRDSICLTGIFIVLAVFLYGIWEGSLL
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHH
FTFYPALDPLLMDKKGLGIFIALFSGLSVPMLLNWGWNRWPSLRSKI
HHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEECCCCCCCCHHHCCC
>Mature Secondary Structure 
SYFLCMLILIMLLDHPVFLVGTLCLSATMAQGLRSVEDWNNYMRLGLMMSVIVLFVNPL
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVRAGETILWWGPKLPLLGHMFITLEAICYGAAMSLKLLNAFSLFFLFSRMVHPDQILSL
HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
FSGTLFRSALVLSLATRLFPTVAQRLKSIQEIQRLRGVQFEQGSRRERLGKYGGLVETLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
YSSLEDALETAEAMEARGFNSGPRTRYRRDLWRPRDSICLTGIFIVLAVFLYGIWEGSLL
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHH
FTFYPALDPLLMDKKGLGIFIALFSGLSVPMLLNWGWNRWPSLRSKI
HHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEECCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]