| Definition | Desulfotomaculum reducens MI-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009253 |
| Length | 3,608,104 |
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The map label for this gene is 134300452
Identifier: 134300452
GI number: 134300452
Start: 2837225
End: 2840188
Strand: Reverse
Name: 134300452
Synonym: Dred_2613
Alternate gene names: NA
Gene position: 2840188-2837225 (Counterclockwise)
Preceding gene: 134300453
Following gene: 134300451
Centisome position: 78.72
GC content: 48.62
Gene sequence:
>2964_bases TTGAATTCGATATACGATTTTCTGTCCTCCCTGTACGGATATTTTGATGACGGTAGTGTCCTGTACTTATGGACACTACC GGATAAACAAACACACCCATTTACCGCAGATGCATTAACAGATATGGCAGCTACAGCTGAAAGGTTAGCTCCTATTCATG ATGTTTATTTTGGGGTTGGTTCACTATCTCAACCATTAGGTCCCTATGAGCGGGCTAAAAATGATTATGTTATGGCAATC CCGGGTCTGTGGGTTGATATCGATATTAAGCATCCTGTGCATAAGATCCAGGAGTTACCGCCGGATATGGCTTCAGCAAT GGATTTACTACAGAACAATATACCTCCATCTATGATTGTCTGGAGTGGGTATGGTATTCACGTGTATTGGTTATTCCGTG AGCCCTGGGAGTTGGATTCACCGGAGGAACGAGCCAGTGCTACCGAATTACTCAGATCAATTCAGGGTTCTGTAAAACAT GCTGCCAGTCAGCGGGGGTGGAAGATAGATCCTACTGCGGATTTAGCCAGAGTGCTCAGGCTACCCGGGACACTAAACAG GAAAATTCCGGACAATCCCGTCCAGGCGCTGGTTATTGAGAGATCAGATGCCCGTTATAACCCGTCTGACATCGCAGACC TATTACCACCGGTACCGGTTGTCACCGGACAAATCCGGACAGAGAAGTTTGAACGCCGCCCAACGGATGGCCCAGCGGAA TTGATGCTTAGGAACTGCCGTTTTTTACAGCACTGTCAATTAAATGCCGCCAGTATTAGCTACGCTGAATGGCTGGCAGC CCTGACGAATATTGTTAGGGCAAACGATGGCATCGATGCAGCACACAAGGTATCTGCCCTAGATCAGGCTCGGTACCAGG CAAAGGATACCGATAAAAAGATAGACGAAGCCTTAAACATGATGAATCCCCAAAACTGCGAGTATATTCGTTCCGTTATC GGGTTCCCTGGGTGCCCTCAGGGGGGCTGTGGAGTGCAGGCCCCTTGTGGATGGAGCTTATCTAAGGTTGGACAGGCTAG GGCTGTTGTACGTGGAATACCGGCTCCCACTCCGGATACAGTATTAACTTCAGAGGTATTAGGAGCACTGGCGGTGCTGA AGAAAGATGACCAGTTAGAATACACCAGATTCAAAGCCACCTGTAAGGGGCGTGTTAACCTGAACGACCTCGAGAAACAA GTTAAGCAACATAGCCGCCAGGTGCGTCAAGATAGCCACCTTCATGTGGTCCAGGATGGGGAAAAGCCCGGCACTAGGAT GCTCAGTAATACTGTCCCTAATATTCCGGTTGATCTAGCCTTACCAACTAACTTTAAGTTTGAGCAAGGCGGAGTATTGT TTATTCGCCGGACTCAGAATGATGACATTATGGCCTATAAGGCTGTTGGGTCTCCGGCCATCGTATCTGAGCGGGTATTT AACGTAGACCTTCAGACCGAAAAACTAGAATTGTGTTACCAGTACCTGAACGGGTGGCGCAAATTATTGTTTACCCGTTC CACGGTAATGGATTCACGTAAGATAATGCGTCTGGCTGACTTTGGTGTGGCCATATCCTCAGAGTCGGCAAAGTATGCGG TAAAGTGGTTTGATTCTCTGCTGGATGCTAACCAGGACCGAATACCAGTTACTCAAGCAGTGTCAAAACTTGGCTGGCGG GGTGACCGTGAATTCATCCTACCAAACTTTAATCCGAAGTATCGAATCGACATTGATGACGATGGCAGCCAGCGTACCAT GTCTGGTTTTACTGTAATAGGCGACCGGTCGGAATGGGTCTCCAGGATGCAGTACCTAAGGCAATCACCAAAGGCACGAT TTATCCTGTCGGCCAGCTTTGCGGCTCCCTTGCTTCGTATCCTGGGGCAGCGTAACTTTATTGTCCATAACTGGGGTGGT AGCCAAGACGGTAAAACAGCCACCCTATGGGCTGCCATGTCTGTATGGGGTAACCCGGATAAACTTATAGGAACCTTTGA TACCACTTCCACAGCGATGGAGCGGAAGGCTGCCCTGCACTCTGATCTTCCCCTAGCCATTAATGAACGCGAGGTATTAA GCCAGAATCGTAAGAATGATATTAATCCGCTGCTGTATGTACTGGGTGAGGGTCGTGGACGTGGCCGGGGAACAAAGACC GGTCTCCAAGATATGGCCACATGGAGAACCGTGGTCATGTCAACAGGAGAAGGTACACTCTCTAATGCCGGATCCTTTGA TGGGGTCATGACTAGGGTGCTAGAGATCAGTGACGGACCCTTGGCCCATGATCGGGAATTTGCCCGTTCTCTGTATTATG TGCTTCCAAAGCATCATGGCCATGCTGGACCAGAATTCCTTCACCAGCTACTAGCTGCTGATTTTGGAACCATATTTACC GCTTATCGTGAATTTCAGACGGCCTTTAGGGCCAGTTTCCCGGATCGGATAGATTCCCATATTGATGCCGTGGCTTGTGT GGCTACAGCCGACTACCTAGCGTCTGCCTGGGTGTTTGGCGAGCCTTGGGAGCAGGCTAAGGCCGGTGCTATGGCCACAG GAATGCACATACTAGCGGGGCTGGTCACAAAAACAGAAGCAAGCGAATCCGGTCGTGCATGGGAAGCGTTCGTTGACTGG TTGGCGGAAAATCAGGATCGGTTAAAAGAACGAGCCGTTGGGCCACGGTTAGGATACATTGAAAAAGCTGCTAACCCTTT TGATAATGGTGGGATTTTTGTAATTCGGAGTGTTGTTGATCAGTTTCTAACAGAACGTTTTTCAAGTAGCCGGAAGATTA TTCGTGAGTGGGCTACTGAGGGGAAGATTGAGTCTTATAACCATGGTGGTAAGACAAGATATGATGCTCCAAGTAAGGCA TTGGAGGGCGGTTTTAGGGCCAGGGTGATAAAACTAAAAGAATTTAATCTTTGCACTTGTACCACTAATAGTGGTACAGA ATAG
Upstream 100 bases:
>100_bases ACCGGATTTAGTTGATTTTAGTATCGAGGAAGAATAATTCGCATTTCAACCATTAAACGCACCATCAATTAATTAACTAT CAAAGGAGGGAGGAAACTAC
Downstream 100 bases:
>100_bases GTTAGTGGTACAGGTAGTGGTACAGAGGCGAAGCCTTGAATGGTAAGGGTTGAAGGGTATTTATATATATAATGTACCAC TGTACCACTAAATATTATAT
Product: superfamily II helicase
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 987; Mature: 987
Protein sequence:
>987_residues MNSIYDFLSSLYGYFDDGSVLYLWTLPDKQTHPFTADALTDMAATAERLAPIHDVYFGVGSLSQPLGPYERAKNDYVMAI PGLWVDIDIKHPVHKIQELPPDMASAMDLLQNNIPPSMIVWSGYGIHVYWLFREPWELDSPEERASATELLRSIQGSVKH AASQRGWKIDPTADLARVLRLPGTLNRKIPDNPVQALVIERSDARYNPSDIADLLPPVPVVTGQIRTEKFERRPTDGPAE LMLRNCRFLQHCQLNAASISYAEWLAALTNIVRANDGIDAAHKVSALDQARYQAKDTDKKIDEALNMMNPQNCEYIRSVI GFPGCPQGGCGVQAPCGWSLSKVGQARAVVRGIPAPTPDTVLTSEVLGALAVLKKDDQLEYTRFKATCKGRVNLNDLEKQ VKQHSRQVRQDSHLHVVQDGEKPGTRMLSNTVPNIPVDLALPTNFKFEQGGVLFIRRTQNDDIMAYKAVGSPAIVSERVF NVDLQTEKLELCYQYLNGWRKLLFTRSTVMDSRKIMRLADFGVAISSESAKYAVKWFDSLLDANQDRIPVTQAVSKLGWR GDREFILPNFNPKYRIDIDDDGSQRTMSGFTVIGDRSEWVSRMQYLRQSPKARFILSASFAAPLLRILGQRNFIVHNWGG SQDGKTATLWAAMSVWGNPDKLIGTFDTTSTAMERKAALHSDLPLAINEREVLSQNRKNDINPLLYVLGEGRGRGRGTKT GLQDMATWRTVVMSTGEGTLSNAGSFDGVMTRVLEISDGPLAHDREFARSLYYVLPKHHGHAGPEFLHQLLAADFGTIFT AYREFQTAFRASFPDRIDSHIDAVACVATADYLASAWVFGEPWEQAKAGAMATGMHILAGLVTKTEASESGRAWEAFVDW LAENQDRLKERAVGPRLGYIEKAANPFDNGGIFVIRSVVDQFLTERFSSSRKIIREWATEGKIESYNHGGKTRYDAPSKA LEGGFRARVIKLKEFNLCTCTTNSGTE
Sequences:
>Translated_987_residues MNSIYDFLSSLYGYFDDGSVLYLWTLPDKQTHPFTADALTDMAATAERLAPIHDVYFGVGSLSQPLGPYERAKNDYVMAI PGLWVDIDIKHPVHKIQELPPDMASAMDLLQNNIPPSMIVWSGYGIHVYWLFREPWELDSPEERASATELLRSIQGSVKH AASQRGWKIDPTADLARVLRLPGTLNRKIPDNPVQALVIERSDARYNPSDIADLLPPVPVVTGQIRTEKFERRPTDGPAE LMLRNCRFLQHCQLNAASISYAEWLAALTNIVRANDGIDAAHKVSALDQARYQAKDTDKKIDEALNMMNPQNCEYIRSVI GFPGCPQGGCGVQAPCGWSLSKVGQARAVVRGIPAPTPDTVLTSEVLGALAVLKKDDQLEYTRFKATCKGRVNLNDLEKQ VKQHSRQVRQDSHLHVVQDGEKPGTRMLSNTVPNIPVDLALPTNFKFEQGGVLFIRRTQNDDIMAYKAVGSPAIVSERVF NVDLQTEKLELCYQYLNGWRKLLFTRSTVMDSRKIMRLADFGVAISSESAKYAVKWFDSLLDANQDRIPVTQAVSKLGWR GDREFILPNFNPKYRIDIDDDGSQRTMSGFTVIGDRSEWVSRMQYLRQSPKARFILSASFAAPLLRILGQRNFIVHNWGG SQDGKTATLWAAMSVWGNPDKLIGTFDTTSTAMERKAALHSDLPLAINEREVLSQNRKNDINPLLYVLGEGRGRGRGTKT GLQDMATWRTVVMSTGEGTLSNAGSFDGVMTRVLEISDGPLAHDREFARSLYYVLPKHHGHAGPEFLHQLLAADFGTIFT AYREFQTAFRASFPDRIDSHIDAVACVATADYLASAWVFGEPWEQAKAGAMATGMHILAGLVTKTEASESGRAWEAFVDW LAENQDRLKERAVGPRLGYIEKAANPFDNGGIFVIRSVVDQFLTERFSSSRKIIREWATEGKIESYNHGGKTRYDAPSKA LEGGFRARVIKLKEFNLCTCTTNSGTE >Mature_987_residues MNSIYDFLSSLYGYFDDGSVLYLWTLPDKQTHPFTADALTDMAATAERLAPIHDVYFGVGSLSQPLGPYERAKNDYVMAI PGLWVDIDIKHPVHKIQELPPDMASAMDLLQNNIPPSMIVWSGYGIHVYWLFREPWELDSPEERASATELLRSIQGSVKH AASQRGWKIDPTADLARVLRLPGTLNRKIPDNPVQALVIERSDARYNPSDIADLLPPVPVVTGQIRTEKFERRPTDGPAE LMLRNCRFLQHCQLNAASISYAEWLAALTNIVRANDGIDAAHKVSALDQARYQAKDTDKKIDEALNMMNPQNCEYIRSVI GFPGCPQGGCGVQAPCGWSLSKVGQARAVVRGIPAPTPDTVLTSEVLGALAVLKKDDQLEYTRFKATCKGRVNLNDLEKQ VKQHSRQVRQDSHLHVVQDGEKPGTRMLSNTVPNIPVDLALPTNFKFEQGGVLFIRRTQNDDIMAYKAVGSPAIVSERVF NVDLQTEKLELCYQYLNGWRKLLFTRSTVMDSRKIMRLADFGVAISSESAKYAVKWFDSLLDANQDRIPVTQAVSKLGWR GDREFILPNFNPKYRIDIDDDGSQRTMSGFTVIGDRSEWVSRMQYLRQSPKARFILSASFAAPLLRILGQRNFIVHNWGG SQDGKTATLWAAMSVWGNPDKLIGTFDTTSTAMERKAALHSDLPLAINEREVLSQNRKNDINPLLYVLGEGRGRGRGTKT GLQDMATWRTVVMSTGEGTLSNAGSFDGVMTRVLEISDGPLAHDREFARSLYYVLPKHHGHAGPEFLHQLLAADFGTIFT AYREFQTAFRASFPDRIDSHIDAVACVATADYLASAWVFGEPWEQAKAGAMATGMHILAGLVTKTEASESGRAWEAFVDW LAENQDRLKERAVGPRLGYIEKAANPFDNGGIFVIRSVVDQFLTERFSSSRKIIREWATEGKIESYNHGGKTRYDAPSKA LEGGFRARVIKLKEFNLCTCTTNSGTE
Specific function: Unknown
COG id: COG5519
COG function: function code L; Superfamily II helicase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 110047; Mature: 110047
Theoretical pI: Translated: 7.32; Mature: 7.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSIYDFLSSLYGYFDDGSVLYLWTLPDKQTHPFTADALTDMAATAERLAPIHDVYFGVG CCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHCCC SLSQPLGPYERAKNDYVMAIPGLWVDIDIKHPVHKIQELPPDMASAMDLLQNNIPPSMIV CCCCCCCCHHHCCCCEEEEECCEEEEEECCCHHHHHHHCCHHHHHHHHHHHCCCCCCEEE WSGYGIHVYWLFREPWELDSPEERASATELLRSIQGSVKHAASQRGWKIDPTADLARVLR EECCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH LPGTLNRKIPDNPVQALVIERSDARYNPSDIADLLPPVPVVTGQIRTEKFERRPTDGPAE CCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCEEECCHHHHHHHCCCCCCHHH LMLRNCRFLQHCQLNAASISYAEWLAALTNIVRANDGIDAAHKVSALDQARYQAKDTDKK HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHH IDEALNMMNPQNCEYIRSVIGFPGCPQGGCGVQAPCGWSLSKVGQARAVVRGIPAPTPDT HHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCH VLTSEVLGALAVLKKDDQLEYTRFKATCKGRVNLNDLEKQVKQHSRQVRQDSHLHVVQDG HHHHHHHHHHHHHCCCCCCCCHHEEHEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC EKPGTRMLSNTVPNIPVDLALPTNFKFEQGGVLFIRRTQNDDIMAYKAVGSPAIVSERVF CCCCHHHHHCCCCCCCEEEECCCCCEECCCCEEEEEECCCCCEEEEEECCCCHHHHHHEE NVDLQTEKLELCYQYLNGWRKLLFTRSTVMDSRKIMRLADFGVAISSESAKYAVKWFDSL ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHH LDANQDRIPVTQAVSKLGWRGDREFILPNFNPKYRIDIDDDGSQRTMSGFTVIGDRSEWV HCCCCCCCCHHHHHHHHCCCCCCCEECCCCCCCEEEEECCCCCCEEECCEEEECCHHHHH SRMQYLRQSPKARFILSASFAAPLLRILGQRNFIVHNWGGSQDGKTATLWAAMSVWGNPD HHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEEHHHHCCCCC KLIGTFDTTSTAMERKAALHSDLPLAINEREVLSQNRKNDINPLLYVLGEGRGRGRGTKT CEEEECCCHHHHHHHHHHHHCCCCCEECHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHH GLQDMATWRTVVMSTGEGTLSNAGSFDGVMTRVLEISDGPLAHDREFARSLYYVLPKHHG HHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCC HAGPEFLHQLLAADFGTIFTAYREFQTAFRASFPDRIDSHIDAVACVATADYLASAWVFG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC EPWEQAKAGAMATGMHILAGLVTKTEASESGRAWEAFVDWLAENQDRLKERAVGPRLGYI CCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCHH EKAANPFDNGGIFVIRSVVDQFLTERFSSSRKIIREWATEGKIESYNHGGKTRYDAPSKA HHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH LEGGFRARVIKLKEFNLCTCTTNSGTE HCCCCEEEEEEEEECCEEEECCCCCCC >Mature Secondary Structure MNSIYDFLSSLYGYFDDGSVLYLWTLPDKQTHPFTADALTDMAATAERLAPIHDVYFGVG CCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHCCC SLSQPLGPYERAKNDYVMAIPGLWVDIDIKHPVHKIQELPPDMASAMDLLQNNIPPSMIV CCCCCCCCHHHCCCCEEEEECCEEEEEECCCHHHHHHHCCHHHHHHHHHHHCCCCCCEEE WSGYGIHVYWLFREPWELDSPEERASATELLRSIQGSVKHAASQRGWKIDPTADLARVLR EECCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH LPGTLNRKIPDNPVQALVIERSDARYNPSDIADLLPPVPVVTGQIRTEKFERRPTDGPAE CCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCEEECCHHHHHHHCCCCCCHHH LMLRNCRFLQHCQLNAASISYAEWLAALTNIVRANDGIDAAHKVSALDQARYQAKDTDKK HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHH IDEALNMMNPQNCEYIRSVIGFPGCPQGGCGVQAPCGWSLSKVGQARAVVRGIPAPTPDT HHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCH VLTSEVLGALAVLKKDDQLEYTRFKATCKGRVNLNDLEKQVKQHSRQVRQDSHLHVVQDG HHHHHHHHHHHHHCCCCCCCCHHEEHEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC EKPGTRMLSNTVPNIPVDLALPTNFKFEQGGVLFIRRTQNDDIMAYKAVGSPAIVSERVF CCCCHHHHHCCCCCCCEEEECCCCCEECCCCEEEEEECCCCCEEEEEECCCCHHHHHHEE NVDLQTEKLELCYQYLNGWRKLLFTRSTVMDSRKIMRLADFGVAISSESAKYAVKWFDSL ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHH LDANQDRIPVTQAVSKLGWRGDREFILPNFNPKYRIDIDDDGSQRTMSGFTVIGDRSEWV HCCCCCCCCHHHHHHHHCCCCCCCEECCCCCCCEEEEECCCCCCEEECCEEEECCHHHHH SRMQYLRQSPKARFILSASFAAPLLRILGQRNFIVHNWGGSQDGKTATLWAAMSVWGNPD HHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEEHHHHCCCCC KLIGTFDTTSTAMERKAALHSDLPLAINEREVLSQNRKNDINPLLYVLGEGRGRGRGTKT CEEEECCCHHHHHHHHHHHHCCCCCEECHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHH GLQDMATWRTVVMSTGEGTLSNAGSFDGVMTRVLEISDGPLAHDREFARSLYYVLPKHHG HHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCC HAGPEFLHQLLAADFGTIFTAYREFQTAFRASFPDRIDSHIDAVACVATADYLASAWVFG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC EPWEQAKAGAMATGMHILAGLVTKTEASESGRAWEAFVDWLAENQDRLKERAVGPRLGYI CCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCHH EKAANPFDNGGIFVIRSVVDQFLTERFSSSRKIIREWATEGKIESYNHGGKTRYDAPSKA HHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH LEGGFRARVIKLKEFNLCTCTTNSGTE HCCCCEEEEEEEEECCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA