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The map label for this gene is rbsD

Identifier: 134300364

GI number: 134300364

Start: 2745069

End: 2745461

Strand: Reverse

Name: rbsD

Synonym: Dred_2525

Alternate gene names: 134300364

Gene position: 2745461-2745069 (Counterclockwise)

Preceding gene: 134300365

Following gene: 134300363

Centisome position: 76.09

GC content: 44.02

Gene sequence:

>393_bases
ATGAAGAAACAAGGAGTATTACACCGGGATTTAGCTGCCTTAATTGCCAGCCTAGGGCATAGGGATGCCATTGTGGTTGC
AGATAGTGGTTTACCAGTACCTCCAGGAGTTAACTGCATTGACCTGGCTGTGACTAAGGGGATACCACCCTTGTTGCCTG
TGCTACAGGTTATTCTTTACGAAATGGTAGTTGAGAGAGTAGTAATAGCTGATGAATTACAGGTTAATCAGTCTTTGGTA
AAGTCCATTGCTGATGAAGTAACACCAGTTTCATTAGAGGTAGTCTCACACGAACAGTTAAAAAGTCTAAGTCAGAGGGC
ACGGGCCGTTATACGTACCGGTGAGTGGACACCCTATGCCAATGTAATACTTTATTCTGGGGTGGCATTTTAA

Upstream 100 bases:

>100_bases
TTGCCAGTGCAGTGGCAGCTTTATCAGTAGGAAAAGAAGGAGCCCAAACCTCTCTGCCATACCGCCAGGAAGTTGAAAAT
TTTATAGGGGGACACCAGTT

Downstream 100 bases:

>100_bases
AGGGGGGCATATCTTGCAGTTACTGGAAATGAAGGATATTACCAAAGATTTTCCAGGAGCCAAAGTCTTAAATGGTGTAC
ATCTAACGGTTAATAAAAAA

Product: RbsD or FucU transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MKKQGVLHRDLAALIASLGHRDAIVVADSGLPVPPGVNCIDLAVTKGIPPLLPVLQVILYEMVVERVVIADELQVNQSLV
KSIADEVTPVSLEVVSHEQLKSLSQRARAVIRTGEWTPYANVILYSGVAF

Sequences:

>Translated_130_residues
MKKQGVLHRDLAALIASLGHRDAIVVADSGLPVPPGVNCIDLAVTKGIPPLLPVLQVILYEMVVERVVIADELQVNQSLV
KSIADEVTPVSLEVVSHEQLKSLSQRARAVIRTGEWTPYANVILYSGVAF
>Mature_130_residues
MKKQGVLHRDLAALIASLGHRDAIVVADSGLPVPPGVNCIDLAVTKGIPPLLPVLQVILYEMVVERVVIADELQVNQSLV
KSIADEVTPVSLEVVSHEQLKSLSQRARAVIRTGEWTPYANVILYSGVAF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=39.568345323741, Blast_Score=114, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSD_DESRM (A4J7I2)

Other databases:

- EMBL:   CP000612
- RefSeq:   YP_001113860.1
- ProteinModelPortal:   A4J7I2
- SMR:   A4J7I2
- STRING:   A4J7I2
- GeneID:   4955544
- GenomeReviews:   CP000612_GR
- KEGG:   drm:Dred_2525
- eggNOG:   COG1869
- HOGENOM:   HBG510403
- OMA:   RAVIRTG
- PhylomeDB:   A4J7I2
- ProtClustDB:   CLSK968282
- BioCyc:   DRED349161:DRED_2525-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01661
- InterPro:   IPR023064
- InterPro:   IPR007721

Pfam domain/function: PF05025 RbsD_FucU; SSF102546 RbsD_FucU

EC number: NA

Molecular weight: Translated: 14030; Mature: 14030

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: ACT_SITE 20-20 BINDING 28-28 BINDING 97-97

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQGVLHRDLAALIASLGHRDAIVVADSGLPVPPGVNCIDLAVTKGIPPLLPVLQVILY
CCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHH
EMVVERVVIADELQVNQSLVKSIADEVTPVSLEVVSHEQLKSLSQRARAVIRTGEWTPYA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHCCCCCCHH
NVILYSGVAF
HHHHHCCCCC
>Mature Secondary Structure
MKKQGVLHRDLAALIASLGHRDAIVVADSGLPVPPGVNCIDLAVTKGIPPLLPVLQVILY
CCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHH
EMVVERVVIADELQVNQSLVKSIADEVTPVSLEVVSHEQLKSLSQRARAVIRTGEWTPYA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHCCCCCCHH
NVILYSGVAF
HHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA