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The map label for this gene is ycfF [C]

Identifier: 134300330

GI number: 134300330

Start: 2710693

End: 2711034

Strand: Reverse

Name: ycfF [C]

Synonym: Dred_2491

Alternate gene names: 134300330

Gene position: 2711034-2710693 (Counterclockwise)

Preceding gene: 134300331

Following gene: 134300329

Centisome position: 75.14

GC content: 41.81

Gene sequence:

>342_bases
GTGCAAGACTGCATTTTTTGTAAGATCATTACCGGAGAAATACCTTCCCAGGTTGTTTACCAAGATGAAAAGGTTTATGC
CTTTAAAGATATTGCTCCTGCTGCTCCGGTGCATATTTTGATCATTCCTAAAAAACACATTTCCTCCTTGGAGGATTTAG
GAAGCGAAGATGCAGACCTAATGGGACATATCCTGTTAATTGCTGCAAAATTGGCAAAGGAACTAGGATTGGCTAAGGGC
TTTAGGATTGTTTCCAACTGTGGAGACGAAGGTGGTCAAACGGTTTATCATATTCACTTCCATCTATTGGGTGGTCGGCA
AATGCAATGGCCTCCAGGTTAA

Upstream 100 bases:

>100_bases
TAACAAGGTTGCAGGATAATATCCTTTGAGTGTTGAATACACTTTTAGGAAAGACTATGTAAAAATAGTTTTAATTTACG
CTGGGGGGAGGTGCTTGCTG

Downstream 100 bases:

>100_bases
AATTATTGACTACAGCCTGATATCAAGTTATAATAAACTGGTATTTATTTTTTACATACTATACACCTCAGATATATTGG
GAATTAGAACTAGATCCAGG

Product: histidine triad (HIT) protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MQDCIFCKIITGEIPSQVVYQDEKVYAFKDIAPAAPVHILIIPKKHISSLEDLGSEDADLMGHILLIAAKLAKELGLAKG
FRIVSNCGDEGGQTVYHIHFHLLGGRQMQWPPG

Sequences:

>Translated_113_residues
MQDCIFCKIITGEIPSQVVYQDEKVYAFKDIAPAAPVHILIIPKKHISSLEDLGSEDADLMGHILLIAAKLAKELGLAKG
FRIVSNCGDEGGQTVYHIHFHLLGGRQMQWPPG
>Mature_113_residues
MQDCIFCKIITGEIPSQVVYQDEKVYAFKDIAPAAPVHILIIPKKHISSLEDLGSEDADLMGHILLIAAKLAKELGLAKG
FRIVSNCGDEGGQTVYHIHFHLLGGRQMQWPPG

Specific function: Unknown

COG id: COG0537

COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HIT domain [H]

Homologues:

Organism=Homo sapiens, GI4885413, Length=111, Percent_Identity=53.1531531531532, Blast_Score=139, Evalue=7e-34,
Organism=Homo sapiens, GI14211923, Length=110, Percent_Identity=49.0909090909091, Blast_Score=127, Evalue=3e-30,
Organism=Escherichia coli, GI1787346, Length=106, Percent_Identity=50.9433962264151, Blast_Score=104, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17506713, Length=112, Percent_Identity=49.1071428571429, Blast_Score=138, Evalue=4e-34,
Organism=Saccharomyces cerevisiae, GI6320078, Length=114, Percent_Identity=40.3508771929825, Blast_Score=77, Evalue=6e-16,
Organism=Drosophila melanogaster, GI28574010, Length=112, Percent_Identity=55.3571428571429, Blast_Score=140, Evalue=1e-34,
Organism=Drosophila melanogaster, GI24581222, Length=112, Percent_Identity=55.3571428571429, Blast_Score=140, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011146
- InterPro:   IPR011151
- InterPro:   IPR019808
- InterPro:   IPR001310 [H]

Pfam domain/function: PF01230 HIT [H]

EC number: NA

Molecular weight: Translated: 12408; Mature: 12408

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: PS00892 HIT_1 ; PS51084 HIT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDCIFCKIITGEIPSQVVYQDEKVYAFKDIAPAAPVHILIIPKKHISSLEDLGSEDADL
CCCEEEEEEECCCCCCCEEECCCEEEEECCCCCCCCEEEEEECHHHHHHHHHCCCCCHHH
MGHILLIAAKLAKELGLAKGFRIVSNCGDEGGQTVYHIHFHLLGGRQMQWPPG
HHHHHHHHHHHHHHHCHHCCHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MQDCIFCKIITGEIPSQVVYQDEKVYAFKDIAPAAPVHILIIPKKHISSLEDLGSEDADL
CCCEEEEEEECCCCCCCEEECCCEEEEECCCCCCCCEEEEEECHHHHHHHHHCCCCCHHH
MGHILLIAAKLAKELGLAKGFRIVSNCGDEGGQTVYHIHFHLLGGRQMQWPPG
HHHHHHHHHHHHHHHCHHCCHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]