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The map label for this gene is yfbE [C]

Identifier: 134300251

GI number: 134300251

Start: 2631943

End: 2633016

Strand: Reverse

Name: yfbE [C]

Synonym: Dred_2412

Alternate gene names: 134300251

Gene position: 2633016-2631943 (Counterclockwise)

Preceding gene: 134300252

Following gene: 134300250

Centisome position: 72.98

GC content: 46.74

Gene sequence:

>1074_bases
ATGGAAACAAGAAGCAAAACCGTTGAGAAATTTGAAGAGGCCTTTGCCCAAACCATAGGTGCTAAATATGCAGTGGCAGT
TTCCAACAGCACCGCTGCCTTCCATGCTGCCCTCTATGCCGCCGGAGTCAGCCACAAAGATGAAGTTATTTTATCGCCCC
TTGTCCACCCGGAGTTGGCCCATGCCATTCGTTACCTGGATGGTGTGCCCATCTACACCGATGTCAATGCCCAAACCGGC
TTGCTGGACCCCGCAGCGGTTCGCTGGCGTATTACTGCCAATACCAGAGCTGTGATTGCCACCCACTATGCCGGGCAACC
CTGTGACATGGATGCCCTTGCCAAAGTTACAGCAGGCAAAGAAATTGTGATTATTGAAGATGCCTCCCAGGCCCTGGGGG
CAAGTTATAAGGGAAAAAAGATTGGTACAGTGAGTTCCCTAACGGTATTTGATTTTTCCCATAAACAGGGTCTCTATACC
GAATTGGGTGGTATGGTGGTAACGGATTCGGCAGAGTACTACCATTGGCTGACATTATTCCGGGATACCGGAATAAGAAG
GGATAAGACAGAACTGGTGAAAGAAGAAGGACCCTGGCACTTTGAAGCCCAGGAAATTGGCTTTAATTATCGTATGACCA
GTATGCAAGCAGAAATGGGGTTGCAACAACTCATAGATATTGAGCAAGTACATGCTGGTCGTCAGGAAATGGCGGAAAAA
TATTTGGCTGCATTGGCAGAGACAGCTGGCTTACAACTACCCATTCAAAACCAGGATAGTCACGGAGCATGGTACTCCTT
CCCGGTGCTTCTTAAGGGAGAACACCTTATTGCCCGGCGAAAGGAGCTCGTAGAAATCTTACTACAGCAGGGAATACCAG
TGGATGTTCAATATTACCCCATTTATTTGCATCCCATTTATTTATGGCAGGGGCATCCGGATGTCTGCACTGTTGAAGGT
CCCCTCTGCCCGAGGGCCGAAGACTTTTACAGAAGAGTCGTAAATTTACCTATTTTGCCATATATTGACAAACAATGCAT
AAAGAAAATTGTTGAAATATTTAATAAATTATAG

Upstream 100 bases:

>100_bases
CCAGTCAAGTAAGACTGGTTTTTTATTTGTTCTGGTTGTTAATCCTAACCATAACATTTTATAATAAAGACTGTTAAAAA
TATACAAAGGAGTCTAACCA

Downstream 100 bases:

>100_bases
GAAAATAGTTAAAAAATAAGACCATGGTCCTATGAGAATTTAGACTAAAGTCATAAAGAAAAGAATGGACAGGCATTGGG
TAATCAAATAAAATAAAATG

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 357

Protein sequence:

>357_residues
METRSKTVEKFEEAFAQTIGAKYAVAVSNSTAAFHAALYAAGVSHKDEVILSPLVHPELAHAIRYLDGVPIYTDVNAQTG
LLDPAAVRWRITANTRAVIATHYAGQPCDMDALAKVTAGKEIVIIEDASQALGASYKGKKIGTVSSLTVFDFSHKQGLYT
ELGGMVVTDSAEYYHWLTLFRDTGIRRDKTELVKEEGPWHFEAQEIGFNYRMTSMQAEMGLQQLIDIEQVHAGRQEMAEK
YLAALAETAGLQLPIQNQDSHGAWYSFPVLLKGEHLIARRKELVEILLQQGIPVDVQYYPIYLHPIYLWQGHPDVCTVEG
PLCPRAEDFYRRVVNLPILPYIDKQCIKKIVEIFNKL

Sequences:

>Translated_357_residues
METRSKTVEKFEEAFAQTIGAKYAVAVSNSTAAFHAALYAAGVSHKDEVILSPLVHPELAHAIRYLDGVPIYTDVNAQTG
LLDPAAVRWRITANTRAVIATHYAGQPCDMDALAKVTAGKEIVIIEDASQALGASYKGKKIGTVSSLTVFDFSHKQGLYT
ELGGMVVTDSAEYYHWLTLFRDTGIRRDKTELVKEEGPWHFEAQEIGFNYRMTSMQAEMGLQQLIDIEQVHAGRQEMAEK
YLAALAETAGLQLPIQNQDSHGAWYSFPVLLKGEHLIARRKELVEILLQQGIPVDVQYYPIYLHPIYLWQGHPDVCTVEG
PLCPRAEDFYRRVVNLPILPYIDKQCIKKIVEIFNKL
>Mature_357_residues
METRSKTVEKFEEAFAQTIGAKYAVAVSNSTAAFHAALYAAGVSHKDEVILSPLVHPELAHAIRYLDGVPIYTDVNAQTG
LLDPAAVRWRITANTRAVIATHYAGQPCDMDALAKVTAGKEIVIIEDASQALGASYKGKKIGTVSSLTVFDFSHKQGLYT
ELGGMVVTDSAEYYHWLTLFRDTGIRRDKTELVKEEGPWHFEAQEIGFNYRMTSMQAEMGLQQLIDIEQVHAGRQEMAEK
YLAALAETAGLQLPIQNQDSHGAWYSFPVLLKGEHLIARRKELVEILLQQGIPVDVQYYPIYLHPIYLWQGHPDVCTVEG
PLCPRAEDFYRRVVNLPILPYIDKQCIKKIVEIFNKL

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=332, Percent_Identity=28.9156626506024, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI2367285, Length=304, Percent_Identity=24.0131578947368, Blast_Score=91, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 39992; Mature: 39992

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METRSKTVEKFEEAFAQTIGAKYAVAVSNSTAAFHAALYAAGVSHKDEVILSPLVHPELA
CCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCHHHH
HAIRYLDGVPIYTDVNAQTGLLDPAAVRWRITANTRAVIATHYAGQPCDMDALAKVTAGK
HHHHHHCCCCEEEECCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHCCCC
EIVIIEDASQALGASYKGKKIGTVSSLTVFDFSHKQGLYTELGGMVVTDSAEYYHWLTLF
EEEEEECCHHHHCCCCCCCCCCCEEEEEEEECCCCCCCHHHHCCEEEECCCCHHHHHHHH
RDTGIRRDKTELVKEEGPWHFEAQEIGFNYRMTSMQAEMGLQQLIDIEQVHAGRQEMAEK
HHCCCCCCHHHHHHCCCCCEEEHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHH
YLAALAETAGLQLPIQNQDSHGAWYSFPVLLKGEHLIARRKELVEILLQQGIPVDVQYYP
HHHHHHHHCCCEEEECCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEE
IYLHPIYLWQGHPDVCTVEGPLCPRAEDFYRRVVNLPILPYIDKQCIKKIVEIFNKL
EEEEEEEEECCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
METRSKTVEKFEEAFAQTIGAKYAVAVSNSTAAFHAALYAAGVSHKDEVILSPLVHPELA
CCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCHHHH
HAIRYLDGVPIYTDVNAQTGLLDPAAVRWRITANTRAVIATHYAGQPCDMDALAKVTAGK
HHHHHHCCCCEEEECCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHCCCC
EIVIIEDASQALGASYKGKKIGTVSSLTVFDFSHKQGLYTELGGMVVTDSAEYYHWLTLF
EEEEEECCHHHHCCCCCCCCCCCEEEEEEEECCCCCCCHHHHCCEEEECCCCHHHHHHHH
RDTGIRRDKTELVKEEGPWHFEAQEIGFNYRMTSMQAEMGLQQLIDIEQVHAGRQEMAEK
HHCCCCCCHHHHHHCCCCCEEEHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHH
YLAALAETAGLQLPIQNQDSHGAWYSFPVLLKGEHLIARRKELVEILLQQGIPVDVQYYP
HHHHHHHHCCCEEEECCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEE
IYLHPIYLWQGHPDVCTVEGPLCPRAEDFYRRVVNLPILPYIDKQCIKKIVEIFNKL
EEEEEEEEECCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]