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The map label for this gene is fliN [H]

Identifier: 134300237

GI number: 134300237

Start: 2619075

End: 2619461

Strand: Reverse

Name: fliN [H]

Synonym: Dred_2398

Alternate gene names: 134300237

Gene position: 2619461-2619075 (Counterclockwise)

Preceding gene: 134300238

Following gene: 134300236

Centisome position: 72.6

GC content: 40.31

Gene sequence:

>387_bases
ATGATGAATGAAAAAGAAATAGAATTGTTTCTGAGTGAGCTGGACGGCACACAAACCAGAGAGGAAGCGGCCATTAAAAA
GGTCCGCTTTCCTCCCTTGGATTCTTTTCGCCAGGAAAGAATCATTAAAACCAGTCTAAGTCACATAGAAGATGTTAAGG
TAACCATAAGCGCTGAATTGGGCGAGAAGATCTTAAAGTTCCGTGAGGTCTTAAACCTGGATGTGGGAACGGTATTGGAT
ATGGAAAAATCCGCCGGGGACGCCATCAATGTTTATATTAATGACATAAAAGCCGCTCAAGGGGAAATCATTATTGTTAA
TGATAAATTTGCTGTAAGAATTAATTCCATTACTTCCCCGAAAAAACTCAGGCGAGAGAGTGAATAA

Upstream 100 bases:

>100_bases
CGCTGAGGAATTAAAAACAGAGATTAACAGCCAGCTTCGCCATGGCAAAATATTGCGAGTTTACTTTTCCGAATATCTCA
CTCAGTAAGGGTGATGCTTA

Downstream 100 bases:

>100_bases
TGGATAACGAAACCATTTGGCTGTTTATAAAAGTATTTACATTGTTGCCTTTAATCCTTGTTTTAGCCTACATAACCATA
AAATATGGACTGGCCCGCAC

Product: surface presentation of antigens (SPOA) protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MMNEKEIELFLSELDGTQTREEAAIKKVRFPPLDSFRQERIIKTSLSHIEDVKVTISAELGEKILKFREVLNLDVGTVLD
MEKSAGDAINVYINDIKAAQGEIIIVNDKFAVRINSITSPKKLRRESE

Sequences:

>Translated_128_residues
MMNEKEIELFLSELDGTQTREEAAIKKVRFPPLDSFRQERIIKTSLSHIEDVKVTISAELGEKILKFREVLNLDVGTVLD
MEKSAGDAINVYINDIKAAQGEIIIVNDKFAVRINSITSPKKLRRESE
>Mature_128_residues
MMNEKEIELFLSELDGTQTREEAAIKKVRFPPLDSFRQERIIKTSLSHIEDVKVTISAELGEKILKFREVLNLDVGTVLD
MEKSAGDAINVYINDIKAAQGEIIIVNDKFAVRINSITSPKKLRRESE

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=80, Percent_Identity=37.5, Blast_Score=60, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 14532; Mature: 14532

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNEKEIELFLSELDGTQTREEAAIKKVRFPPLDSFRQERIIKTSLSHIEDVKVTISAEL
CCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEHHH
GEKILKFREVLNLDVGTVLDMEKSAGDAINVYINDIKAAQGEIIIVNDKFAVRINSITSP
HHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEEECEECCCCCEEEECCCEEEEECCCCCH
KKLRRESE
HHHHCCCC
>Mature Secondary Structure
MMNEKEIELFLSELDGTQTREEAAIKKVRFPPLDSFRQERIIKTSLSHIEDVKVTISAEL
CCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEHHH
GEKILKFREVLNLDVGTVLDMEKSAGDAINVYINDIKAAQGEIIIVNDKFAVRINSITSP
HHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEEECEECCCCCEEEECCCEEEEECCCCCH
KKLRRESE
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7622217; 10984043 [H]