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The map label for this gene is fliR [H]

Identifier: 134300233

GI number: 134300233

Start: 2616841

End: 2617608

Strand: Reverse

Name: fliR [H]

Synonym: Dred_2394

Alternate gene names: 134300233

Gene position: 2617608-2616841 (Counterclockwise)

Preceding gene: 134300234

Following gene: 134300232

Centisome position: 72.55

GC content: 45.18

Gene sequence:

>768_bases
GTGATTAATCTAGTTTATGTAACCACCTTCTTTTTGGTATTTGTTAGAATGTTATCCTTTATTTTTTCTTGTCCACTGTA
TGCCATACCGGGCATTCCGCCCTTGGTTAAGGCGGGGCTATCCTTAGTTTTGGCTGCTCTGACAGCCCCTCTGGTAGAAC
CAGCTGCAGCCAGCTTTCCCGGTGGTTTATGGGGATTGGGTCTGGCGGTTTTTAGTGAAGTGGGAGTGGGACTTGCCATA
GGCTTGGTCTGTACCTTTGTTTTTAATGCCATTCGGATTGCCGGCCAATTGCTGGATTTTCAAATTGGATTTGCCATGGC
CGCTGTCATGGACCCTTTGGGTGGCGGCATGAACACCCTGGTTTCCCGGTTCCTTTTCTTTATGACGCTGGTCTTATATA
TGAATATGGATGGTCATCATGCTTTGATTCGTGCTCTGGTAAAAAGTTATGAGCTTGTTCCCTTGACTGCTGCGGCTATG
AATGGTGAACTAACCCTATTAATCATTCGAATTTTTACCGATACCTTTGCCTTGGCAGTTCAGATTTGTGCCCCGGTTGT
AGCAGTACTGGTGATTACCGACTTGGCCATGGGGCTAATAGGTAAAACAGCACCTCAGCTCAATATATTTCAACTTGGTT
TTCCTTTGAAAATTGCGGTGGGGGTTTCCACATTGGCAATATTATTACCAGCCCTAACCTCCGTCTTTAAATACTTATTT
GATACCCTGCATAAGGATCTATTACTCTTGCTGAAGGGGTTGGCCTGA

Upstream 100 bases:

>100_bases
ACCTTAATTGTAGCTGCTGGCTGGCTACTAAATATAGCCATACGTTTCACTACTCGATTATATGAACAGATACCCAACCT
TATTCGTTAGAGGTGTGGAA

Downstream 100 bases:

>100_bases
TGCCAGAAGGTTCTCAGGAAAAAACTGAACAGGCGACGCCCAGGCGATTGCAGGAGGCCCGACGTAAAGGTCAGGTGCCT
AAAAGTGCCGACCTAAACGG

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MINLVYVTTFFLVFVRMLSFIFSCPLYAIPGIPPLVKAGLSLVLAALTAPLVEPAAASFPGGLWGLGLAVFSEVGVGLAI
GLVCTFVFNAIRIAGQLLDFQIGFAMAAVMDPLGGGMNTLVSRFLFFMTLVLYMNMDGHHALIRALVKSYELVPLTAAAM
NGELTLLIIRIFTDTFALAVQICAPVVAVLVITDLAMGLIGKTAPQLNIFQLGFPLKIAVGVSTLAILLPALTSVFKYLF
DTLHKDLLLLLKGLA

Sequences:

>Translated_255_residues
MINLVYVTTFFLVFVRMLSFIFSCPLYAIPGIPPLVKAGLSLVLAALTAPLVEPAAASFPGGLWGLGLAVFSEVGVGLAI
GLVCTFVFNAIRIAGQLLDFQIGFAMAAVMDPLGGGMNTLVSRFLFFMTLVLYMNMDGHHALIRALVKSYELVPLTAAAM
NGELTLLIIRIFTDTFALAVQICAPVVAVLVITDLAMGLIGKTAPQLNIFQLGFPLKIAVGVSTLAILLPALTSVFKYLF
DTLHKDLLLLLKGLA
>Mature_255_residues
MINLVYVTTFFLVFVRMLSFIFSCPLYAIPGIPPLVKAGLSLVLAALTAPLVEPAAASFPGGLWGLGLAVFSEVGVGLAI
GLVCTFVFNAIRIAGQLLDFQIGFAMAAVMDPLGGGMNTLVSRFLFFMTLVLYMNMDGHHALIRALVKSYELVPLTAAAM
NGELTLLIIRIFTDTFALAVQICAPVVAVLVITDLAMGLIGKTAPQLNIFQLGFPLKIAVGVSTLAILLPALTSVFKYLF
DTLHKDLLLLLKGLA

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=240, Percent_Identity=29.1666666666667, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 27162; Mature: 27162

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINLVYVTTFFLVFVRMLSFIFSCPLYAIPGIPPLVKAGLSLVLAALTAPLVEPAAASFP
CCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHCCC
GGLWGLGLAVFSEVGVGLAIGLVCTFVFNAIRIAGQLLDFQIGFAMAAVMDPLGGGMNTL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
VSRFLFFMTLVLYMNMDGHHALIRALVKSYELVPLTAAAMNGELTLLIIRIFTDTFALAV
HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
QICAPVVAVLVITDLAMGLIGKTAPQLNIFQLGFPLKIAVGVSTLAILLPALTSVFKYLF
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
DTLHKDLLLLLKGLA
HHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8299954; 9384377 [H]