Click here to switch to the map view.

The map label for this gene is spoVB [H]

Identifier: 134299615

GI number: 134299615

Start: 1923320

End: 1924867

Strand: Reverse

Name: spoVB [H]

Synonym: Dred_1761

Alternate gene names: 134299615

Gene position: 1924867-1923320 (Counterclockwise)

Preceding gene: 134299629

Following gene: 134299606

Centisome position: 53.35

GC content: 39.34

Gene sequence:

>1548_bases
ATGTCTCGACAATCTTTTATAACTGGTGCTTTGATTTTACTTTCAGCAAGCTTTATTAATAGAGTCATTGGTTTTGTTTA
TCAAATGGTTATTATCCGACTAATTAAACCCGAAGGAATCGGCTTATTCAATATGGTTTTTCCCATTTACATTTTAATTT
TGGTAATGGCAACGATGGGAATACCCGTTGCCATTTCTAAACTTCTTGCAGAGGAAATGGCAAAAAATAATATACATGGT
GCAAAAAGGATTTTTAAAATTTCTTTGTCTATTTTGTTTGTCTCCAGTGTGTTCTTTACTGTATTATTATTTTTCTGTGC
TCCACTACTAACCAAATACCTGTTTCCAAACCCCAAGGTATATTATATCTTTCTGTGTCTTGTTCCAGCAATCATTGTGG
TTTCCATTTGCTCAGCCTTCCGTGGTTATTTTCAGGGACTGCAGCAAATGACACCCACTGCCATTACGCAAACCCTTGAA
CAATTCGTGCGGGTTGTCTCCGGTCTGTTCATAGCCTATCTCCTACTGCCTAGGGGCGTGGAATATGCTGCCATGGGTGC
CGCTTTAGGTGTAGTGATTGGCGAGTTTACTGGGTGTTTAACAATCATCTATCTTTACTTTAACCATCAAAGACCCCATG
CCTTTGGAAAACATAGGCTTTACGAGCCCTTTAAAACAACCATTTCAAGAATATTTGGGTTGGGCATACCAGTTACCTTA
ATGCGCTTCTTCAGCACCCTGCTTCTGTCAGTGGAAGCAATCTTAATACCTCAGAGACTGCAAGCAGCAGGTATGTCTGT
GGGCGAAGCAACATCAGTCTATGGCCAACTGGTTGGCATAGCACAAACTTTGTTATACACTCCTTCCATGATAACCATTG
CTCTGGCCACAGCTTTGATTCCCGCCATTGCAGATGCTCTGGCCCTTGAAAACTACAGGCTAGTACAAAATCGAACAGCC
AAGGCATTGAGAATCACCATTGTGGTTGGTTTACCTTGTGTTGTATCTTTTCTTTTAATTCCCAATGAGATGTGCGGTGT
GCTCTTTGGTTATGCAGAGTCCGGAACTATTTTAGCTGTGCTAGCCATTGGGGGACCCTTCTTATATTTTCAGCAAACAA
CTACTGGAATATTACAAGGAATGGGTGAAGCCATGAAACCATTTAAGAACATGGCTATTGCTTCTGTTTTTAAAATACTG
GGCCTATATTACTTAACATCCATTCCCCACTTTGGCGTTCTGGGTGCTGCAGCGTCTTTAAATCTTGGATTTATTTTGAT
GGCCTTGTTAAATTATATTGATCTTCGAAAACTAATTGGTTACCAAATTCATTGGTCTCATGATATTGTTAAACCCGTTC
TTTCCTCGGTAGCCATGGCAATATTTATTTGGAAAATAAAAATGCTCTTCTCATTTTCTTCACTTGTGACTTTGCTTGTG
GCTTTACCTGCGGGTTGTATTATCTATGTTTTGATTTTGTTTTTGTTGGGAGGACTCCACCGTAATGACTTTAAATTAAT
AAAAAACATAATTAACAGACGTTTCTAA

Upstream 100 bases:

>100_bases
GCATTCAGATTCCATATGTCTTCCTTTCATACCAATTAAGCCCAGATCATACACATAATAGTGGACTATCTGGCTTGACC
AGTACGAAAGGAAAATAGGC

Downstream 100 bases:

>100_bases
ACTTTTTTTGGTCAAAACACCAAAATCTTTGCGTAATATTATTCTCACCAGTATCACATACTAGGATCACAGAAAGGAAA
TAATATAATGTTTGATTTTG

Product: polysaccharide biosynthesis protein

Products: NA

Alternate protein names: Stage III sporulation protein F [H]

Number of amino acids: Translated: 515; Mature: 514

Protein sequence:

>515_residues
MSRQSFITGALILLSASFINRVIGFVYQMVIIRLIKPEGIGLFNMVFPIYILILVMATMGIPVAISKLLAEEMAKNNIHG
AKRIFKISLSILFVSSVFFTVLLFFCAPLLTKYLFPNPKVYYIFLCLVPAIIVVSICSAFRGYFQGLQQMTPTAITQTLE
QFVRVVSGLFIAYLLLPRGVEYAAMGAALGVVIGEFTGCLTIIYLYFNHQRPHAFGKHRLYEPFKTTISRIFGLGIPVTL
MRFFSTLLLSVEAILIPQRLQAAGMSVGEATSVYGQLVGIAQTLLYTPSMITIALATALIPAIADALALENYRLVQNRTA
KALRITIVVGLPCVVSFLLIPNEMCGVLFGYAESGTILAVLAIGGPFLYFQQTTTGILQGMGEAMKPFKNMAIASVFKIL
GLYYLTSIPHFGVLGAAASLNLGFILMALLNYIDLRKLIGYQIHWSHDIVKPVLSSVAMAIFIWKIKMLFSFSSLVTLLV
ALPAGCIIYVLILFLLGGLHRNDFKLIKNIINRRF

Sequences:

>Translated_515_residues
MSRQSFITGALILLSASFINRVIGFVYQMVIIRLIKPEGIGLFNMVFPIYILILVMATMGIPVAISKLLAEEMAKNNIHG
AKRIFKISLSILFVSSVFFTVLLFFCAPLLTKYLFPNPKVYYIFLCLVPAIIVVSICSAFRGYFQGLQQMTPTAITQTLE
QFVRVVSGLFIAYLLLPRGVEYAAMGAALGVVIGEFTGCLTIIYLYFNHQRPHAFGKHRLYEPFKTTISRIFGLGIPVTL
MRFFSTLLLSVEAILIPQRLQAAGMSVGEATSVYGQLVGIAQTLLYTPSMITIALATALIPAIADALALENYRLVQNRTA
KALRITIVVGLPCVVSFLLIPNEMCGVLFGYAESGTILAVLAIGGPFLYFQQTTTGILQGMGEAMKPFKNMAIASVFKIL
GLYYLTSIPHFGVLGAAASLNLGFILMALLNYIDLRKLIGYQIHWSHDIVKPVLSSVAMAIFIWKIKMLFSFSSLVTLLV
ALPAGCIIYVLILFLLGGLHRNDFKLIKNIINRRF
>Mature_514_residues
SRQSFITGALILLSASFINRVIGFVYQMVIIRLIKPEGIGLFNMVFPIYILILVMATMGIPVAISKLLAEEMAKNNIHGA
KRIFKISLSILFVSSVFFTVLLFFCAPLLTKYLFPNPKVYYIFLCLVPAIIVVSICSAFRGYFQGLQQMTPTAITQTLEQ
FVRVVSGLFIAYLLLPRGVEYAAMGAALGVVIGEFTGCLTIIYLYFNHQRPHAFGKHRLYEPFKTTISRIFGLGIPVTLM
RFFSTLLLSVEAILIPQRLQAAGMSVGEATSVYGQLVGIAQTLLYTPSMITIALATALIPAIADALALENYRLVQNRTAK
ALRITIVVGLPCVVSFLLIPNEMCGVLFGYAESGTILAVLAIGGPFLYFQQTTTGILQGMGEAMKPFKNMAIASVFKILG
LYYLTSIPHFGVLGAAASLNLGFILMALLNYIDLRKLIGYQIHWSHDIVKPVLSSVAMAIFIWKIKMLFSFSSLVTLLVA
LPAGCIIYVLILFLLGGLHRNDFKLIKNIINRRF

Specific function: Involved, directly or indirectly, in spore cortex biosynthesis. Affects only indirectly the expression of late sporulation genes [H]

COG id: COG2244

COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002528
- InterPro:   IPR002797
- InterPro:   IPR014249 [H]

Pfam domain/function: PF01943 Polysacc_synt [H]

EC number: NA

Molecular weight: Translated: 56811; Mature: 56679

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
SRQSFITGALILLSASFINRVIGFVYQMVIIRLIKPEGIGLFNMVFPIYILILVMATMG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
IPVAISKLLAEEMAKNNIHGAKRIFKISLSILFVSSVFFTVLLFFCAPLLTKYLFPNPKV
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
YYIFLCLVPAIIVVSICSAFRGYFQGLQQMTPTAITQTLEQFVRVVSGLFIAYLLLPRGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EYAAMGAALGVVIGEFTGCLTIIYLYFNHQRPHAFGKHRLYEPFKTTISRIFGLGIPVTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHCCCHHHH
MRFFSTLLLSVEAILIPQRLQAAGMSVGEATSVYGQLVGIAQTLLYTPSMITIALATALI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
PAIADALALENYRLVQNRTAKALRITIVVGLPCVVSFLLIPNEMCGVLFGYAESGTILAV
HHHHHHHHHHHHHHHHHCCCHHEEEEEEECHHHHHHHHHCCHHHHHHHHHCCCCCCEEEE
LAIGGPFLYFQQTTTGILQGMGEAMKPFKNMAIASVFKILGLYYLTSIPHFGVLGAAASL
EECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
NLGFILMALLNYIDLRKLIGYQIHWSHDIVKPVLSSVAMAIFIWKIKMLFSFSSLVTLLV
HHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALPAGCIIYVLILFLLGGLHRNDFKLIKNIINRRF
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1744050; 9384377 [H]