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The map label for this gene is pdaB [H]

Identifier: 134299462

GI number: 134299462

Start: 1744646

End: 1745392

Strand: Reverse

Name: pdaB [H]

Synonym: Dred_1605

Alternate gene names: 134299462

Gene position: 1745392-1744646 (Counterclockwise)

Preceding gene: 134299466

Following gene: 134299461

Centisome position: 48.37

GC content: 42.03

Gene sequence:

>747_bases
TTGAGAGTTTTTGTTTTTGACTACCGTAAATTTAAAAAACAAGTACTGCTTTTGGGAACTTTCTTTCTCTGTGCCGTTTT
CTTCACAACCATGTTATATCAGCAACAGATGCTGCCAACCACTGCAAAAAAATATGCCATTTATAAAGTAAAAACCGATA
AAAAGGTGGTGGCCTTAACCTTTGATATTAGTTGGGGCACCAAAGTGCCGGGTCCGGTTCTGGATACCTTAAAAAAACAC
AATGTTAAATCCACCTTTTTCATTTCGGGTCCCTGGGCCGTAAAACACCCTGAATTTCCCAAAAGAATTGTGGCAGAGGG
ACATGAAATAGCCAGCCACGGTGAAGAACACGTAAACCTAAGCGAATACAACAAGGATGAAGTAAAGAAAAACATTCTTA
CGGCACATGGTAAAATTAAAGAAGTCACCGGCGTAGAACCATCTTTAATTCGTACACCTAATGGCGACTGGAACGACATG
GTACTTACCACCGCAGAGGAACTAAATTACCGCGTCATCCAGTGGAGTGCCGATTCACTGGATTGGAAAAAACCCGGTGT
ACAGGCCATTGTGGATCGAGTTTTAAAAAAAACAGAACCTGGTGCAATTATCCTAATGCATGCCAGTGACACTTGTCTCC
AAACGCCTGAAGCACTGCCCCAGGTGCTGGAAGGTCTTAAAGAAAAGGGTTATACATTGGTAACTGTTTCGGAACTTCTT
AAACATGGCGAAGGAACCATCGATTAA

Upstream 100 bases:

>100_bases
AGCTGATAACAGGAAAGGGTTATCAGCATTGGGAAAATTTTATAGTTTTTTCATATCCTTTAACGTATTTAAATACTATA
GTTTATAGGGGGTGTAAGTA

Downstream 100 bases:

>100_bases
ACAGCAAGTGGGTCTATTTTCGACCCACTTGCTGTTTATATTTTCGCTCCCTTTGGGGCAAGGTAAGGAAAATGAGAAAA
TGGTGATAGCATGACAAAAA

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MRVFVFDYRKFKKQVLLLGTFFLCAVFFTTMLYQQQMLPTTAKKYAIYKVKTDKKVVALTFDISWGTKVPGPVLDTLKKH
NVKSTFFISGPWAVKHPEFPKRIVAEGHEIASHGEEHVNLSEYNKDEVKKNILTAHGKIKEVTGVEPSLIRTPNGDWNDM
VLTTAEELNYRVIQWSADSLDWKKPGVQAIVDRVLKKTEPGAIILMHASDTCLQTPEALPQVLEGLKEKGYTLVTVSELL
KHGEGTID

Sequences:

>Translated_248_residues
MRVFVFDYRKFKKQVLLLGTFFLCAVFFTTMLYQQQMLPTTAKKYAIYKVKTDKKVVALTFDISWGTKVPGPVLDTLKKH
NVKSTFFISGPWAVKHPEFPKRIVAEGHEIASHGEEHVNLSEYNKDEVKKNILTAHGKIKEVTGVEPSLIRTPNGDWNDM
VLTTAEELNYRVIQWSADSLDWKKPGVQAIVDRVLKKTEPGAIILMHASDTCLQTPEALPQVLEGLKEKGYTLVTVSELL
KHGEGTID
>Mature_248_residues
MRVFVFDYRKFKKQVLLLGTFFLCAVFFTTMLYQQQMLPTTAKKYAIYKVKTDKKVVALTFDISWGTKVPGPVLDTLKKH
NVKSTFFISGPWAVKHPEFPKRIVAEGHEIASHGEEHVNLSEYNKDEVKKNILTAHGKIKEVTGVEPSLIRTPNGDWNDM
VLTTAEELNYRVIQWSADSLDWKKPGVQAIVDRVLKKTEPGAIILMHASDTCLQTPEALPQVLEGLKEKGYTLVTVSELL
KHGEGTID

Specific function: Necessary to maintain spores after the late stage of sporulation. Might be involved in cortex formation [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Forespore. Note=Produced in the mother cell compartment and transported into the forespore [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509
- InterPro:   IPR014132 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 28044; Mature: 28044

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVFVFDYRKFKKQVLLLGTFFLCAVFFTTMLYQQQMLPTTAKKYAIYKVKTDKKVVALT
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEECCCEEEEEE
FDISWGTKVPGPVLDTLKKHNVKSTFFISGPWAVKHPEFPKRIVAEGHEIASHGEEHVNL
EEECCCCCCCCHHHHHHHHCCCCEEEEEECCEECCCCCCCHHHHHCCHHHHHCCHHCCCH
SEYNKDEVKKNILTAHGKIKEVTGVEPSLIRTPNGDWNDMVLTTAEELNYRVIQWSADSL
HHCCHHHHHHHHHHHCCCEEECCCCCCCEEECCCCCCCCEEEEEHHHCCEEEEEEECCCC
DWKKPGVQAIVDRVLKKTEPGAIILMHASDTCLQTPEALPQVLEGLKEKGYTLVTVSELL
CCCCCCHHHHHHHHHHCCCCCEEEEEECCCHHHCCHHHHHHHHHHHHHCCCEEEEHHHHH
KHGEGTID
HCCCCCCC
>Mature Secondary Structure
MRVFVFDYRKFKKQVLLLGTFFLCAVFFTTMLYQQQMLPTTAKKYAIYKVKTDKKVVALT
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEECCCEEEEEE
FDISWGTKVPGPVLDTLKKHNVKSTFFISGPWAVKHPEFPKRIVAEGHEIASHGEEHVNL
EEECCCCCCCCHHHHHHHHCCCCEEEEEECCEECCCCCCCHHHHHCCHHHHHCCHHCCCH
SEYNKDEVKKNILTAHGKIKEVTGVEPSLIRTPNGDWNDMVLTTAEELNYRVIQWSADSL
HHCCHHHHHHHHHHHCCCEEECCCCCCCEEECCCCCCCCEEEEEHHHCCEEEEEEECCCC
DWKKPGVQAIVDRVLKKTEPGAIILMHASDTCLQTPEALPQVLEGLKEKGYTLVTVSELL
CCCCCCHHHHHHHHHHCCCCCEEEEEECCCHHHCCHHHHHHHHHHHHHCCCEEEEHHHHH
KHGEGTID
HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969501; 9384377; 8576055 [H]