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The map label for this gene is yhcF [H]

Identifier: 134299374

GI number: 134299374

Start: 1644599

End: 1644961

Strand: Reverse

Name: yhcF [H]

Synonym: Dred_1515

Alternate gene names: 134299374

Gene position: 1644961-1644599 (Counterclockwise)

Preceding gene: 134299375

Following gene: 134299373

Centisome position: 45.59

GC content: 43.53

Gene sequence:

>363_bases
ATGACCAACTTTAACAACACCCAACCCATTTATTTGCAAATTATCCAGCGTCTCTGTCGACAGATTATCCGTGGGGAACT
TAATGCCGGTGACAAATTACCTTCGGTGAGGGAATTAGCTATTCAACTGGGGGTTAATCCCAACACCACCCAGCGGGTCT
ATGCTGAGATGGAGCGAATTGAGGTTGCGGAAACCCGTCGTGGTTTAGGAACCTTTATCACAGAAAATGAAAGCAGGCTA
ATACAACTACGGGAAGAACTTATGAGCGAACAAATTATCAGCTTCATTAATGATATGAAAGAGATGGGGTTCACAGCTGC
AGAAATTGTCGAAGGTGTAAGAAAGGTCCTGGAAAAAGAGTAA

Upstream 100 bases:

>100_bases
TCAACTTTATGCCGGTCAGATTTTTATGGTCTTTATCGTAACAGTTGCCGTGCTGGCCCTTTCTTCCTGGCTCATAGATA
ACAAAGTTGAGGTATAAAAA

Downstream 100 bases:

>100_bases
ATGAGGTGTAATGGATGTCTGAACAAATTGTTGAATTTAAGAATGTTACAAAAAAATACCCCCGACAGGTAGCTTTAGAT
AATGTTAGCTTTGCCCTGCC

Product: regulatory protein GntR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 119

Protein sequence:

>120_residues
MTNFNNTQPIYLQIIQRLCRQIIRGELNAGDKLPSVRELAIQLGVNPNTTQRVYAEMERIEVAETRRGLGTFITENESRL
IQLREELMSEQIISFINDMKEMGFTAAEIVEGVRKVLEKE

Sequences:

>Translated_120_residues
MTNFNNTQPIYLQIIQRLCRQIIRGELNAGDKLPSVRELAIQLGVNPNTTQRVYAEMERIEVAETRRGLGTFITENESRL
IQLREELMSEQIISFINDMKEMGFTAAEIVEGVRKVLEKE
>Mature_119_residues
TNFNNTQPIYLQIIQRLCRQIIRGELNAGDKLPSVRELAIQLGVNPNTTQRVYAEMERIEVAETRRGLGTFITENESRLI
QLREELMSEQIISFINDMKEMGFTAAEIVEGVRKVLEKE

Specific function: Possible Transcriptional Regulator Of The Succinyl-CoA- Synthetase Operon. Binds Specifically To The Farr Promoter And Exhibits Weak Binding To The Citrate Synthase And Lipoamide Dehydrogenase Promoters. Binding At The Farr Promoter Is Abolished By Long-

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 13841; Mature: 13710

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNFNNTQPIYLQIIQRLCRQIIRGELNAGDKLPSVRELAIQLGVNPNTTQRVYAEMERI
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHH
EVAETRRGLGTFITENESRLIQLREELMSEQIISFINDMKEMGFTAAEIVEGVRKVLEKE
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TNFNNTQPIYLQIIQRLCRQIIRGELNAGDKLPSVRELAIQLGVNPNTTQRVYAEMERI
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHH
EVAETRRGLGTFITENESRLIQLREELMSEQIISFINDMKEMGFTAAEIVEGVRKVLEKE
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]