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The map label for this gene is yibD [C]

Identifier: 134299252

GI number: 134299252

Start: 1501267

End: 1502388

Strand: Reverse

Name: yibD [C]

Synonym: Dred_1393

Alternate gene names: 134299252

Gene position: 1502388-1501267 (Counterclockwise)

Preceding gene: 134299259

Following gene: 134299251

Centisome position: 41.64

GC content: 36.45

Gene sequence:

>1122_bases
GTGATCAGTGTTATTATGCCTGTCTATAACGGGGCAGAATTTTTAAAAGAAACCATTGAAAGTGTATTAAACCAAACAGA
AAAAAACTTTGAGTTGATTATCATTAACGACGGATCTACCGATCAGAGTGAGGATGTTATATTATCCTTCTCTGACCCAC
GCATTCTATACTTTAAACAGGAAAATAGTGGAGCAGCAGCGGCAAGGAACAGGGGATTAGAAAAAGCTTGTGGTGATTTT
GTGGTTATTCAAGATGCAGATGACATATCTTTACCAAACCGTTTTGAAGTTCTAAAAAGTCAATTCACCTCTCCAACTGT
TGGAATTGTCCATTCAGATGTTTTACTAATAAACGAAGAAAATCACCCAATGGGCTACTGGGCAGCCAGTAACATTGAAA
AGAGTAGTATGTTAAGGTTTTTTCTTAAAATAGGAACGCCCTTTAATAATAATAGTTTAATGTTACGACGGAAAGCATTA
GAAAATTTACGCTATGATCCATCCCTGCGAATTGGGGAAGATACTGAAATGATCTCTCATGTGGCCAAAAGCTGGGATGC
AGTTCATGTTCCGAAGCCGTTACTTCTATACCGCCGACATACTAATAATTTAACTAATGAAAAAGACTATCATGTTTTAT
TTGCCCATATGCAAAAATTCTTAGACAGTCATACCCTTGAAGAATTGGTTCCGGAACTTGATTGGCACAATGCCGAATTA
AAAGAGAACCAGGCCAGAGCATGTGCCATTATTTCCTTATTCTTATTAAGACGTAGGATGGTTCATGATTGTCAAGCATG
GTATAACAGATCACTTGAAACACTAAATGGTTCCAACGATTCTATTGTAAATGCCATCGGTCATATAATATTAGGTAACT
ATAAAAATGCTTTGAATTTCCTTCATTCCTACCCTGAACAAAACCCTGTGGTTGAAAATTATGTTGGAGAAACCTATGCC
TTATTAGGACAGATGGAGAAAGCCTTTGCTCACTTTTTAAAAGCACTACAGTTAAATCCCCTTTATCTAGAACCTCTTGA
TAACTTAAAAGCAATCGGTGGCCTAAAAGGGTTGAATTTGCTGGATCGGTCTTGGAATAATTTTTTATTTGCAAATAATT
AA

Upstream 100 bases:

>100_bases
TATTTACACCCCCGTTTTAGAAGTCTACAACTCACATTTACTTCATATAAATATATGTTAGATAGTTAATTATGTGCGTA
GGCAAAGGGGGTTTTCTCCA

Downstream 100 bases:

>100_bases
CTTGTTCAGTACTGGTGTAAAAAACCGGTACTTTTTTATGCCCTAGAGTTTTAAGTCAAAAATTTAGTAATTTTTAAATA
TTTCATACTTTTACACTCAA

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MISVIMPVYNGAEFLKETIESVLNQTEKNFELIIINDGSTDQSEDVILSFSDPRILYFKQENSGAAAARNRGLEKACGDF
VVIQDADDISLPNRFEVLKSQFTSPTVGIVHSDVLLINEENHPMGYWAASNIEKSSMLRFFLKIGTPFNNNSLMLRRKAL
ENLRYDPSLRIGEDTEMISHVAKSWDAVHVPKPLLLYRRHTNNLTNEKDYHVLFAHMQKFLDSHTLEELVPELDWHNAEL
KENQARACAIISLFLLRRRMVHDCQAWYNRSLETLNGSNDSIVNAIGHIILGNYKNALNFLHSYPEQNPVVENYVGETYA
LLGQMEKAFAHFLKALQLNPLYLEPLDNLKAIGGLKGLNLLDRSWNNFLFANN

Sequences:

>Translated_373_residues
MISVIMPVYNGAEFLKETIESVLNQTEKNFELIIINDGSTDQSEDVILSFSDPRILYFKQENSGAAAARNRGLEKACGDF
VVIQDADDISLPNRFEVLKSQFTSPTVGIVHSDVLLINEENHPMGYWAASNIEKSSMLRFFLKIGTPFNNNSLMLRRKAL
ENLRYDPSLRIGEDTEMISHVAKSWDAVHVPKPLLLYRRHTNNLTNEKDYHVLFAHMQKFLDSHTLEELVPELDWHNAEL
KENQARACAIISLFLLRRRMVHDCQAWYNRSLETLNGSNDSIVNAIGHIILGNYKNALNFLHSYPEQNPVVENYVGETYA
LLGQMEKAFAHFLKALQLNPLYLEPLDNLKAIGGLKGLNLLDRSWNNFLFANN
>Mature_373_residues
MISVIMPVYNGAEFLKETIESVLNQTEKNFELIIINDGSTDQSEDVILSFSDPRILYFKQENSGAAAARNRGLEKACGDF
VVIQDADDISLPNRFEVLKSQFTSPTVGIVHSDVLLINEENHPMGYWAASNIEKSSMLRFFLKIGTPFNNNSLMLRRKAL
ENLRYDPSLRIGEDTEMISHVAKSWDAVHVPKPLLLYRRHTNNLTNEKDYHVLFAHMQKFLDSHTLEELVPELDWHNAEL
KENQARACAIISLFLLRRRMVHDCQAWYNRSLETLNGSNDSIVNAIGHIILGNYKNALNFLHSYPEQNPVVENYVGETYA
LLGQMEKAFAHFLKALQLNPLYLEPLDNLKAIGGLKGLNLLDRSWNNFLFANN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=101, Percent_Identity=41.5841584158416, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1788372, Length=101, Percent_Identity=38.6138613861386, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 42566; Mature: 42566

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISVIMPVYNGAEFLKETIESVLNQTEKNFELIIINDGSTDQSEDVILSFSDPRILYFKQ
CCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEEECCCEEEEEEE
ENSGAAAARNRGLEKACGDFVVIQDADDISLPNRFEVLKSQFTSPTVGIVHSDVLLINEE
CCCCCHHHHHCCHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEECCEEEEECC
NHPMGYWAASNIEKSSMLRFFLKIGTPFNNNSLMLRRKALENLRYDPSLRIGEDTEMISH
CCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEHHHHHHCCCCCCCCCCCHHHHHHH
VAKSWDAVHVPKPLLLYRRHTNNLTNEKDYHVLFAHMQKFLDSHTLEELVPELDWHNAEL
HHHCCCCCCCCCHHHEEEHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
KENQARACAIISLFLLRRRMVHDCQAWYNRSLETLNGSNDSIVNAIGHIILGNYKNALNF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHCCCHHHHHHH
LHSYPEQNPVVENYVGETYALLGQMEKAFAHFLKALQLNPLYLEPLDNLKAIGGLKGLNL
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHCCCCCCHH
LDRSWNNFLFANN
HHHCCCCCEEECC
>Mature Secondary Structure
MISVIMPVYNGAEFLKETIESVLNQTEKNFELIIINDGSTDQSEDVILSFSDPRILYFKQ
CCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEEECCCEEEEEEE
ENSGAAAARNRGLEKACGDFVVIQDADDISLPNRFEVLKSQFTSPTVGIVHSDVLLINEE
CCCCCHHHHHCCHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEECCEEEEECC
NHPMGYWAASNIEKSSMLRFFLKIGTPFNNNSLMLRRKALENLRYDPSLRIGEDTEMISH
CCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEHHHHHHCCCCCCCCCCCHHHHHHH
VAKSWDAVHVPKPLLLYRRHTNNLTNEKDYHVLFAHMQKFLDSHTLEELVPELDWHNAEL
HHHCCCCCCCCCHHHEEEHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
KENQARACAIISLFLLRRRMVHDCQAWYNRSLETLNGSNDSIVNAIGHIILGNYKNALNF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHCCCHHHHHHH
LHSYPEQNPVVENYVGETYALLGQMEKAFAHFLKALQLNPLYLEPLDNLKAIGGLKGLNL
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHCCCCCCHH
LDRSWNNFLFANN
HHHCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA