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The map label for this gene is yecS [H]

Identifier: 134299235

GI number: 134299235

Start: 1479341

End: 1480012

Strand: Reverse

Name: yecS [H]

Synonym: Dred_1376

Alternate gene names: 134299235

Gene position: 1480012-1479341 (Counterclockwise)

Preceding gene: 134299236

Following gene: 134299234

Centisome position: 41.02

GC content: 41.37

Gene sequence:

>672_bases
ATGCACGTAGGCCCATTGGACATAAATTTTATCATAAAAATTCTACCCAATTTATTATTGGGAGCTGTCATGACAATTAA
GTTAACTTTTTTTGCCATTACCTTTGGGACCTTAATTGGTTTGCTTGTCGCCCTAGCTAAAATTTCCAGCTTTAAAATAT
TACGTTGGTTTGGGGGACTCTACACCTGGGTTATCCGTGGTGTCCCCCTTCTTCTTCAACTAATGTTTTTATATTATGGC
CTACCCTTTATGGGACTTACTCTGAATGAATTTACCGTGGCTGTCATTGGTATGTCTGTGTGCGGCGGTGCCTATATTGC
AGAAATTATGCGGGCCGGTATTCAGTCCATTGATAAAGGTCAGATGGAAGCAGCACTTTCCATGGGTATGACTTACCCCC
AGGCCATGCGCCGGGTTATTCTTCCCCAAGCATATAAACGCCTGCTTCCTCCAATGGGTAACGAATTTATTACATTAATG
AAAGACAGTGCACTGGTCTCTGTTATTTGTATGACTGAACTATTAAGGGCAGCTAACCTGTTGCAAAACGCTACTTTTCG
TCCCATTGAGATTTATGTTGTTGCAGGACTCCTTTATCTGATAATGACAACTTTCTTTACAATGGTGGTAAACCGCTTGG
AAAAAAAATTAGCGGTCTCCGAAGGTGATTAG

Upstream 100 bases:

>100_bases
GAAAAAGGATGGAACCTTAACTAAAATTTCTATGAAGTGGTTTAACAGAGATATTACCGTTAAGTAAGAATAATAAAAAA
CTGGTTAGGTTGGTGACAAC

Downstream 100 bases:

>100_bases
GAGGGGTACAGATGATTAAGGTTCAAAATATTACCAAAGACTTTGGTAAACTAAAAGTGCTAAGGGGACTCGACCTGGAA
GTAAAACAAGGTGAAGTGGT

Product: polar amino acid ABC transporter, inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MHVGPLDINFIIKILPNLLLGAVMTIKLTFFAITFGTLIGLLVALAKISSFKILRWFGGLYTWVIRGVPLLLQLMFLYYG
LPFMGLTLNEFTVAVIGMSVCGGAYIAEIMRAGIQSIDKGQMEAALSMGMTYPQAMRRVILPQAYKRLLPPMGNEFITLM
KDSALVSVICMTELLRAANLLQNATFRPIEIYVVAGLLYLIMTTFFTMVVNRLEKKLAVSEGD

Sequences:

>Translated_223_residues
MHVGPLDINFIIKILPNLLLGAVMTIKLTFFAITFGTLIGLLVALAKISSFKILRWFGGLYTWVIRGVPLLLQLMFLYYG
LPFMGLTLNEFTVAVIGMSVCGGAYIAEIMRAGIQSIDKGQMEAALSMGMTYPQAMRRVILPQAYKRLLPPMGNEFITLM
KDSALVSVICMTELLRAANLLQNATFRPIEIYVVAGLLYLIMTTFFTMVVNRLEKKLAVSEGD
>Mature_223_residues
MHVGPLDINFIIKILPNLLLGAVMTIKLTFFAITFGTLIGLLVALAKISSFKILRWFGGLYTWVIRGVPLLLQLMFLYYG
LPFMGLTLNEFTVAVIGMSVCGGAYIAEIMRAGIQSIDKGQMEAALSMGMTYPQAMRRVILPQAYKRLLPPMGNEFITLM
KDSALVSVICMTELLRAANLLQNATFRPIEIYVVAGLLYLIMTTFFTMVVNRLEKKLAVSEGD

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=217, Percent_Identity=43.3179723502304, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI1787030, Length=215, Percent_Identity=37.2093023255814, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI1786873, Length=220, Percent_Identity=34.5454545454545, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI1788646, Length=214, Percent_Identity=29.9065420560748, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1787087, Length=220, Percent_Identity=25, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1788645, Length=208, Percent_Identity=29.8076923076923, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1786874, Length=210, Percent_Identity=29.5238095238095, Blast_Score=97, Evalue=6e-22,
Organism=Escherichia coli, GI48994930, Length=167, Percent_Identity=32.3353293413174, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI87082239, Length=186, Percent_Identity=35.4838709677419, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787086, Length=215, Percent_Identity=25.5813953488372, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24757; Mature: 24757

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
6.7 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
6.7 %Met     (Mature Protein)
7.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHVGPLDINFIIKILPNLLLGAVMTIKLTFFAITFGTLIGLLVALAKISSFKILRWFGGL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YTWVIRGVPLLLQLMFLYYGLPFMGLTLNEFTVAVIGMSVCGGAYIAEIMRAGIQSIDKG
HHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
QMEAALSMGMTYPQAMRRVILPQAYKRLLPPMGNEFITLMKDSALVSVICMTELLRAANL
HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LQNATFRPIEIYVVAGLLYLIMTTFFTMVVNRLEKKLAVSEGD
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MHVGPLDINFIIKILPNLLLGAVMTIKLTFFAITFGTLIGLLVALAKISSFKILRWFGGL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YTWVIRGVPLLLQLMFLYYGLPFMGLTLNEFTVAVIGMSVCGGAYIAEIMRAGIQSIDKG
HHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
QMEAALSMGMTYPQAMRRVILPQAYKRLLPPMGNEFITLMKDSALVSVICMTELLRAANL
HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LQNATFRPIEIYVVAGLLYLIMTTFFTMVVNRLEKKLAVSEGD
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]