Click here to switch to the map view.

The map label for this gene is ytqA [H]

Identifier: 134299221

GI number: 134299221

Start: 1456043

End: 1456999

Strand: Reverse

Name: ytqA [H]

Synonym: Dred_1358

Alternate gene names: 134299221

Gene position: 1456999-1456043 (Counterclockwise)

Preceding gene: 134299223

Following gene: 134299214

Centisome position: 40.38

GC content: 40.54

Gene sequence:

>957_bases
ATGATGTTTGAAAAAACAAATCGCTATCGTCAATATTCAGAACACCTGGTAAAAAAATTTGGCCAAAAAGTATATAAATT
GCCTGTTAACCTACCCGGCTCCTGCCCAAACCGAGATGGCACTGTGGGACGTGGTGGCTGTATCTTCTGTGATGAAGAGG
GGGCTGGCTTTGAGTGCTTGCCCAACACCCTAAGTGTTAAACAACAGATCCAAAAAAACCGTGAGTTTTTTGTCAAACGA
TTTAATGCTAAAAAGTTTATTGTCTATTTCCAGGCCTTTACCAACACCTATATGCCCCTAGAACAATTCAAGGAAAACAT
CCGGGCTGCCCTTAACGAAGAGGATGTGATAGGCATATCCATTTCCACCCGTCCAGACTGTATCAACGATGTCTATCTGG
ACTTTTTAAAGGATATACAGAACCAGCGAGGATTGGATATTAATATTGAATTGGGACTACAAACGGTTAATTACCATACC
CTGACAAAAGTAAACCGGGGTCATACCCTGGCAGAGTTTATTGATGCTGTGCAACGAATCAAGCAGAGAAACTTTGAAAT
TTGTGTCCATATTATTTTAAATTTACCCTGGGATAACCTGCTAGACGTAATTGAGAATGCTAAAATTCTTTCTGCCATGG
ATATCCATTATGTAAAATTGCATTCTCTTTATGTTGTAAAAGGAACTGTATTGGCAGATATGTATGAGAGGGACGAATTC
AGCATCATATCCCTGGAGGAGTATATCACCCGGGTTGTAACCTTTTTGGAATACTTGAACCCGGATACAGTGGTGCAACG
CTTAGTGGGTAAGGGACCTCAGGATAATCAGCTGTTTTCAAATTGGAGCACCAGTTGGTGGAAGATTAAGCAGTCCATTG
AAAAGGCCTTGGAGGAAAAGGACACCTGGCAGGGCAAGAAATGTAATTATTTAAATGGTAAGGCATTGAATTTTTAA

Upstream 100 bases:

>100_bases
TTCTTCATTTGCCCTTTTTATGAGACGTTGTTGATCATAAAACAACTATGATATACTAACTGTTAGGTATAAAATTAATA
TATAGTATGCTGAGGTATCT

Downstream 100 bases:

>100_bases
TTTTACTTCGGTAACATCATTGAGGTCGTTCCTAAGAACGACCTCGTTTTTATATTCTATCTAACTAGGCACCATGTATC
AGGCTTTTCAACGGCGCCCA

Product: putative radical SAM protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MMFEKTNRYRQYSEHLVKKFGQKVYKLPVNLPGSCPNRDGTVGRGGCIFCDEEGAGFECLPNTLSVKQQIQKNREFFVKR
FNAKKFIVYFQAFTNTYMPLEQFKENIRAALNEEDVIGISISTRPDCINDVYLDFLKDIQNQRGLDINIELGLQTVNYHT
LTKVNRGHTLAEFIDAVQRIKQRNFEICVHIILNLPWDNLLDVIENAKILSAMDIHYVKLHSLYVVKGTVLADMYERDEF
SIISLEEYITRVVTFLEYLNPDTVVQRLVGKGPQDNQLFSNWSTSWWKIKQSIEKALEEKDTWQGKKCNYLNGKALNF

Sequences:

>Translated_318_residues
MMFEKTNRYRQYSEHLVKKFGQKVYKLPVNLPGSCPNRDGTVGRGGCIFCDEEGAGFECLPNTLSVKQQIQKNREFFVKR
FNAKKFIVYFQAFTNTYMPLEQFKENIRAALNEEDVIGISISTRPDCINDVYLDFLKDIQNQRGLDINIELGLQTVNYHT
LTKVNRGHTLAEFIDAVQRIKQRNFEICVHIILNLPWDNLLDVIENAKILSAMDIHYVKLHSLYVVKGTVLADMYERDEF
SIISLEEYITRVVTFLEYLNPDTVVQRLVGKGPQDNQLFSNWSTSWWKIKQSIEKALEEKDTWQGKKCNYLNGKALNF
>Mature_318_residues
MMFEKTNRYRQYSEHLVKKFGQKVYKLPVNLPGSCPNRDGTVGRGGCIFCDEEGAGFECLPNTLSVKQQIQKNREFFVKR
FNAKKFIVYFQAFTNTYMPLEQFKENIRAALNEEDVIGISISTRPDCINDVYLDFLKDIQNQRGLDINIELGLQTVNYHT
LTKVNRGHTLAEFIDAVQRIKQRNFEICVHIILNLPWDNLLDVIENAKILSAMDIHYVKLHSLYVVKGTVLADMYERDEF
SIISLEEYITRVVTFLEYLNPDTVVQRLVGKGPQDNQLFSNWSTSWWKIKQSIEKALEEKDTWQGKKCNYLNGKALNF

Specific function: Unknown

COG id: COG1242

COG function: function code R; Predicted Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI2367204, Length=291, Percent_Identity=30.9278350515464, Blast_Score=184, Evalue=7e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR005911
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 37019; Mature: 37019

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMFEKTNRYRQYSEHLVKKFGQKVYKLPVNLPGSCPNRDGTVGRGGCIFCDEEGAGFECL
CCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEC
PNTLSVKQQIQKNREFFVKRFNAKKFIVYFQAFTNTYMPLEQFKENIRAALNEEDVIGIS
CCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHCCCCCHHHHHHHHHHHCCCCCEEEEE
ISTRPDCINDVYLDFLKDIQNQRGLDINIELGLQTVNYHTLTKVNRGHTLAEFIDAVQRI
ECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECEEEECCHHHEECCCCCHHHHHHHHHHHH
KQRNFEICVHIILNLPWDNLLDVIENAKILSAMDIHYVKLHSLYVVKGTVLADMYERDEF
HHCCHHEEEEEEEECCHHHHHHHHHCCHHHHHHHHHHEEEHEEEEEHHHHHHHHHHCCCC
SIISLEEYITRVVTFLEYLNPDTVVQRLVGKGPQDNQLFSNWSTSWWKIKQSIEKALEEK
EEEEHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHH
DTWQGKKCNYLNGKALNF
HCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MMFEKTNRYRQYSEHLVKKFGQKVYKLPVNLPGSCPNRDGTVGRGGCIFCDEEGAGFECL
CCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEC
PNTLSVKQQIQKNREFFVKRFNAKKFIVYFQAFTNTYMPLEQFKENIRAALNEEDVIGIS
CCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHCCCCCHHHHHHHHHHHCCCCCEEEEE
ISTRPDCINDVYLDFLKDIQNQRGLDINIELGLQTVNYHTLTKVNRGHTLAEFIDAVQRI
ECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECEEEECCHHHEECCCCCHHHHHHHHHHHH
KQRNFEICVHIILNLPWDNLLDVIENAKILSAMDIHYVKLHSLYVVKGTVLADMYERDEF
HHCCHHEEEEEEEECCHHHHHHHHHCCHHHHHHHHHHEEEHEEEEEHHHHHHHHHHCCCC
SIISLEEYITRVVTFLEYLNPDTVVQRLVGKGPQDNQLFSNWSTSWWKIKQSIEKALEEK
EEEEHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHH
DTWQGKKCNYLNGKALNF
HCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]