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The map label for this gene is insF1 [C]

Identifier: 134298877

GI number: 134298877

Start: 1087211

End: 1087909

Strand: Reverse

Name: insF1 [C]

Synonym: Dred_1013

Alternate gene names: 134298877

Gene position: 1087909-1087211 (Counterclockwise)

Preceding gene: 134298878

Following gene: 134298876

Centisome position: 30.15

GC content: 40.49

Gene sequence:

>699_bases
ATGTGCCAAGTGCTTGAAGTGTCAAGAAGCGGTTATTATAGCTGGCGTAAAAGGCCAAAAAGTAAACGTAAAAAGGCTAA
TGAAAAATTGTTGGAACAGATCAAGGACATCCATAGAAAATCCCGGGGTCTATACGGGGTCAGGAAGATCACTAAGGAAC
TAAACAACAAAAAGAAGATAAAATGTGGTCATAACCGGGTATATAAGCTCATGAAGGAAAACGGAATAAGTTCTAAAAGA
CCGCGCCGGTTTAAGGCTACTACCAATTCCAAGCATAATTATCCAGTGGCCGAAAATTTATTAAACCAGAACTTTAAGGT
AAACCAACCGAATAAGGTGTGGGTATCAGACATAACTTATGTTCCTACTGATGAAGGTTGGCTTTACTTTGCAGCTATAA
TCGACTTGTGTCATAAAAAGATTGTCGGTTGGTCTATGGATAGCACAATGACTAAAGGATTGGTCATCAACGCTCTTAAG
CAAGCTGTTCGCCGGGCTAGGCCGCCTAAAGGAGTTATCCATCATTCAGACCAGGGTAGCCAATATGCAAGCCATGCATA
CCAGTCACTTTTAAAAAAGTACGGCTTTATTGCAAGTATGAGCCGAAAAGGCAACTGTTACGATAACGCCTGTGCAGAAT
CATTTTTTAGCACCTTAAAAAATGAGCTTATCCATTTATCACGTTTCAAGACCAGGTAG

Upstream 100 bases:

>100_bases
AAAATGCTATTTTAAAAAAGGCAGCGGCCATCTTCGCAAACCACCGGAAATAAGATATCAATTTATAGATGCACACCGCT
TCGAATTCAGGGTGGAGAAG

Downstream 100 bases:

>100_bases
GAAGCCAGACAAGCGATATTTGAGTATGTAGAAGTCCTTTATAATCGGATCAGGCTGCATGCAAGTTTGGGCTATATGTC
CCCTTGTGAGTACGAACTAT

Product: integrase catalytic subunit

Products: NA

Alternate protein names: ISO-S3 31 kDa protein [H]

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MCQVLEVSRSGYYSWRKRPKSKRKKANEKLLEQIKDIHRKSRGLYGVRKITKELNNKKKIKCGHNRVYKLMKENGISSKR
PRRFKATTNSKHNYPVAENLLNQNFKVNQPNKVWVSDITYVPTDEGWLYFAAIIDLCHKKIVGWSMDSTMTKGLVINALK
QAVRRARPPKGVIHHSDQGSQYASHAYQSLLKKYGFIASMSRKGNCYDNACAESFFSTLKNELIHLSRFKTR

Sequences:

>Translated_232_residues
MCQVLEVSRSGYYSWRKRPKSKRKKANEKLLEQIKDIHRKSRGLYGVRKITKELNNKKKIKCGHNRVYKLMKENGISSKR
PRRFKATTNSKHNYPVAENLLNQNFKVNQPNKVWVSDITYVPTDEGWLYFAAIIDLCHKKIVGWSMDSTMTKGLVINALK
QAVRRARPPKGVIHHSDQGSQYASHAYQSLLKKYGFIASMSRKGNCYDNACAESFFSTLKNELIHLSRFKTR
>Mature_232_residues
MCQVLEVSRSGYYSWRKRPKSKRKKANEKLLEQIKDIHRKSRGLYGVRKITKELNNKKKIKCGHNRVYKLMKENGISSKR
PRRFKATTNSKHNYPVAENLLNQNFKVNQPNKVWVSDITYVPTDEGWLYFAAIIDLCHKKIVGWSMDSTMTKGLVINALK
QAVRRARPPKGVIHHSDQGSQYASHAYQSLLKKYGFIASMSRKGNCYDNACAESFFSTLKNELIHLSRFKTR

Specific function: Involved in the transposition of the insertion sequence is3 [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=232, Percent_Identity=36.6379310344828, Blast_Score=149, Evalue=3e-36,
Organism=Escherichia coli, GI1788405, Length=234, Percent_Identity=41.4529914529915, Blast_Score=191, Evalue=4e-50,
Organism=Escherichia coli, GI1787263, Length=234, Percent_Identity=41.4529914529915, Blast_Score=191, Evalue=4e-50,
Organism=Escherichia coli, GI1786753, Length=234, Percent_Identity=41.4529914529915, Blast_Score=191, Evalue=4e-50,
Organism=Escherichia coli, GI1786570, Length=234, Percent_Identity=41.4529914529915, Blast_Score=191, Evalue=4e-50,
Organism=Escherichia coli, GI1786490, Length=234, Percent_Identity=41.4529914529915, Blast_Score=191, Evalue=4e-50,
Organism=Escherichia coli, GI1789981, Length=233, Percent_Identity=34.7639484978541, Blast_Score=139, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 26928; Mature: 26928

Theoretical pI: Translated: 10.85; Mature: 10.85

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCQVLEVSRSGYYSWRKRPKSKRKKANEKLLEQIKDIHRKSRGLYGVRKITKELNNKKKI
CCCCEEHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCE
KCGHNRVYKLMKENGISSKRPRRFKATTNSKHNYPVAENLLNQNFKVNQPNKVWVSDITY
EHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCHHHHHHCCCCCCCCCCEEEEECEEE
VPTDEGWLYFAAIIDLCHKKIVGWSMDSTMTKGLVINALKQAVRRARPPKGVIHHSDQGS
CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCH
QYASHAYQSLLKKYGFIASMSRKGNCYDNACAESFFSTLKNELIHLSRFKTR
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MCQVLEVSRSGYYSWRKRPKSKRKKANEKLLEQIKDIHRKSRGLYGVRKITKELNNKKKI
CCCCEEHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCE
KCGHNRVYKLMKENGISSKRPRRFKATTNSKHNYPVAENLLNQNFKVNQPNKVWVSDITY
EHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCHHHHHHCCCCCCCCCCEEEEECEEE
VPTDEGWLYFAAIIDLCHKKIVGWSMDSTMTKGLVINALKQAVRRARPPKGVIHHSDQGS
CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCH
QYASHAYQSLLKKYGFIASMSRKGNCYDNACAESFFSTLKNELIHLSRFKTR
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2824781 [H]