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The map label for this gene is yagA [C]

Identifier: 134298874

GI number: 134298874

Start: 1084432

End: 1085811

Strand: Reverse

Name: yagA [C]

Synonym: Dred_1010

Alternate gene names: 134298874

Gene position: 1085811-1084432 (Counterclockwise)

Preceding gene: 134298875

Following gene: 134298873

Centisome position: 30.09

GC content: 37.9

Gene sequence:

>1380_bases
ATGCTCACAGCCAAAGATAGGGAAAGTATTGCTCTTAAGAAATTTTCTTTGATTAGTCCAGTACTAAATGGCCAGGTTAA
AAACCAAAAGGATTATTTCGAAACTATATGTGTTAAGCCCATTGATATGCCCTATTATGGATTCAGGATGTATTCCCCAA
AAACTCTTATGTGTTGGTTAAGTGATTATCGTCGTGGGGGATTAGACTCATTAAAGCCAGGTTACCGATCGGATAAGGGT
AAAAGCCGAAAGGTAAGCCTAGAGATTGCTGATGAAATTCGTAAGAAAAGAAGCCAAATGCCACGGATTACTAGCGCACT
GCTCTATGAAGAGTTAGTTAAAGATAAAGTTATTCTTCCGGAAAAGTTGTCACGAGCGACTTTTTACCGTTTTCTGGTCG
CTAATCCTGAACTGGCTGCAGGTAAAGATCCAGAAAACCCTGGTGAGAAGGAACTTAAACGTTTTTCTCACCAAAGAATT
AATGAATTATGGCAAACTGATATTATGTTTGGTCCATATATTAGTATAGGTAAATCAAAGAAACAAGCCTACCTAATCGC
ATTTATCGATGATGCCTCCAGGTTGATAACACATGCACAATTCTTCTTTTTTCAAAACTTCGTAGCTCTTCGAGTAGCTT
TGAAAGAGGCTGTTCTAAAACGAGGAATTCCCAAAATGATCTATACAGATAACGGAAAAGTTTATCGTAGTGATCAACTA
AATATGCTTTGTGCTGGATTAGGTTGCTCGTTAATTCATACAGAACCTTTCACCCCTACGTCTAAGGGTAAAATTGAAAG
GTTTTTTCATACTGTGAGGCAACGCTTTTTATCTAGATTAGACCCCACTAAATTAAAAAGTTTAGACCAACTAAATTTAT
ATTTTTGGCAATGGCTGGAGGAAGATTATCAGTGCAAGACCCATAGTGCTTTAAATATGAGTCCATTAGATTTTTTTATG
GCTCAAGTCCATAATATTAATTTTTTAGCCAACCCCCAATTATTAGAGGAGCATTTTTTATTGCGCGTTACCAGAAAAGT
TAATCATGATGCGACCCTGTCTGTTGAATCTATTCTTTATGAAACGGAGCAAAGCTTAGCCAATTCACGACTAGAGGTAC
GGTACGACCCAGATTGGTTAGCTAATTCAAACCAACCAATTTTATTATACCGGGATGGTATGAAAGTTGGTGAGGCCAGA
CAAGTAAATTTTTTTGACAATGCTAGGGCTAAAAGAAAGGGTCGAGGTCGGCAATCTCAGTCATCACAGGAGTTACTGGA
ATCGGTTGAAACGTCGGAACAGAAAGCAACTCCTAGTATTTCTTATGCTCAAATTGATGACCAACTTAAACAATCGTCAA
GAGAAGTAGGTGATCGCTAA

Upstream 100 bases:

>100_bases
GGAAAGGCTATTGCTCGGTGGTATTATGCAGTTTGTGGGAGAAGTTTAACCGGTTAGACCTCCTCTGACAGTTAACACAC
AGGTGGAGGTGTATTTTGTT

Downstream 100 bases:

>100_bases
TGTTTACACAATTCTTTGGACTTAAATTTAACCCTTTTTCTAAAGAAGTACCGGCGGACAAATTATTTATTAGCCAAGAC
TTATTGGAACTAGAATCGAG

Product: integrase catalytic subunit

Products: NA

Alternate protein names: ORF 480 [H]

Number of amino acids: Translated: 459; Mature: 459

Protein sequence:

>459_residues
MLTAKDRESIALKKFSLISPVLNGQVKNQKDYFETICVKPIDMPYYGFRMYSPKTLMCWLSDYRRGGLDSLKPGYRSDKG
KSRKVSLEIADEIRKKRSQMPRITSALLYEELVKDKVILPEKLSRATFYRFLVANPELAAGKDPENPGEKELKRFSHQRI
NELWQTDIMFGPYISIGKSKKQAYLIAFIDDASRLITHAQFFFFQNFVALRVALKEAVLKRGIPKMIYTDNGKVYRSDQL
NMLCAGLGCSLIHTEPFTPTSKGKIERFFHTVRQRFLSRLDPTKLKSLDQLNLYFWQWLEEDYQCKTHSALNMSPLDFFM
AQVHNINFLANPQLLEEHFLLRVTRKVNHDATLSVESILYETEQSLANSRLEVRYDPDWLANSNQPILLYRDGMKVGEAR
QVNFFDNARAKRKGRGRQSQSSQELLESVETSEQKATPSISYAQIDDQLKQSSREVGDR

Sequences:

>Translated_459_residues
MLTAKDRESIALKKFSLISPVLNGQVKNQKDYFETICVKPIDMPYYGFRMYSPKTLMCWLSDYRRGGLDSLKPGYRSDKG
KSRKVSLEIADEIRKKRSQMPRITSALLYEELVKDKVILPEKLSRATFYRFLVANPELAAGKDPENPGEKELKRFSHQRI
NELWQTDIMFGPYISIGKSKKQAYLIAFIDDASRLITHAQFFFFQNFVALRVALKEAVLKRGIPKMIYTDNGKVYRSDQL
NMLCAGLGCSLIHTEPFTPTSKGKIERFFHTVRQRFLSRLDPTKLKSLDQLNLYFWQWLEEDYQCKTHSALNMSPLDFFM
AQVHNINFLANPQLLEEHFLLRVTRKVNHDATLSVESILYETEQSLANSRLEVRYDPDWLANSNQPILLYRDGMKVGEAR
QVNFFDNARAKRKGRGRQSQSSQELLESVETSEQKATPSISYAQIDDQLKQSSREVGDR
>Mature_459_residues
MLTAKDRESIALKKFSLISPVLNGQVKNQKDYFETICVKPIDMPYYGFRMYSPKTLMCWLSDYRRGGLDSLKPGYRSDKG
KSRKVSLEIADEIRKKRSQMPRITSALLYEELVKDKVILPEKLSRATFYRFLVANPELAAGKDPENPGEKELKRFSHQRI
NELWQTDIMFGPYISIGKSKKQAYLIAFIDDASRLITHAQFFFFQNFVALRVALKEAVLKRGIPKMIYTDNGKVYRSDQL
NMLCAGLGCSLIHTEPFTPTSKGKIERFFHTVRQRFLSRLDPTKLKSLDQLNLYFWQWLEEDYQCKTHSALNMSPLDFFM
AQVHNINFLANPQLLEEHFLLRVTRKVNHDATLSVESILYETEQSLANSRLEVRYDPDWLANSNQPILLYRDGMKVGEAR
QVNFFDNARAKRKGRGRQSQSSQELLESVETSEQKATPSISYAQIDDQLKQSSREVGDR

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337
- InterPro:   IPR015378
- InterPro:   IPR009004 [H]

Pfam domain/function: PF09299 Mu-transpos_C; PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 53194; Mature: 53194

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTAKDRESIALKKFSLISPVLNGQVKNQKDYFETICVKPIDMPYYGFRMYSPKTLMCWL
CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCEEECCCCHHHHHH
SDYRRGGLDSLKPGYRSDKGKSRKVSLEIADEIRKKRSQMPRITSALLYEELVKDKVILP
HHHCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCH
EKLSRATFYRFLVANPELAAGKDPENPGEKELKRFSHQRINELWQTDIMFGPYISIGKSK
HHHHHHHHHHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
KQAYLIAFIDDASRLITHAQFFFFQNFVALRVALKEAVLKRGIPKMIYTDNGKVYRSDQL
CCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEECCCC
NMLCAGLGCSLIHTEPFTPTSKGKIERFFHTVRQRFLSRLDPTKLKSLDQLNLYFWQWLE
HHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
EDYQCKTHSALNMSPLDFFMAQVHNINFLANPQLLEEHFLLRVTRKVNHDATLSVESILY
HHHCCCCCCCCCCCHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHCCCCCEEHHHHHHH
ETEQSLANSRLEVRYDPDWLANSNQPILLYRDGMKVGEARQVNFFDNARAKRKGRGRQSQ
HHHHHHHCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCEEECCHHHHHHHHHCCCCCCC
SSQELLESVETSEQKATPSISYAQIDDQLKQSSREVGDR
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLTAKDRESIALKKFSLISPVLNGQVKNQKDYFETICVKPIDMPYYGFRMYSPKTLMCWL
CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCEEECCCCHHHHHH
SDYRRGGLDSLKPGYRSDKGKSRKVSLEIADEIRKKRSQMPRITSALLYEELVKDKVILP
HHHCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCH
EKLSRATFYRFLVANPELAAGKDPENPGEKELKRFSHQRINELWQTDIMFGPYISIGKSK
HHHHHHHHHHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
KQAYLIAFIDDASRLITHAQFFFFQNFVALRVALKEAVLKRGIPKMIYTDNGKVYRSDQL
CCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEECCCC
NMLCAGLGCSLIHTEPFTPTSKGKIERFFHTVRQRFLSRLDPTKLKSLDQLNLYFWQWLE
HHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
EDYQCKTHSALNMSPLDFFMAQVHNINFLANPQLLEEHFLLRVTRKVNHDATLSVESILY
HHHCCCCCCCCCCCHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHCCCCCEEHHHHHHH
ETEQSLANSRLEVRYDPDWLANSNQPILLYRDGMKVGEARQVNFFDNARAKRKGRGRQSQ
HHHHHHHCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCEEECCHHHHHHHHHCCCCCCC
SSQELLESVETSEQKATPSISYAQIDDQLKQSSREVGDR
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2170815 [H]