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The map label for this gene is sigK [H]

Identifier: 134298777

GI number: 134298777

Start: 972478

End: 972834

Strand: Reverse

Name: sigK [H]

Synonym: Dred_0912

Alternate gene names: 134298777

Gene position: 972834-972478 (Counterclockwise)

Preceding gene: 134298778

Following gene: 134298773

Centisome position: 26.96

GC content: 39.5

Gene sequence:

>357_bases
ATGCATCTGCGTTTTATAAAGAAAGTTAAGGCAGAGGTTTCATTGTATGACCCCATTGGTGTGGATAAAGAGGGAAATGA
GATAAGTTTAATTGATATTCTGGGAACAGATCCAGAAGTTGTGGCAGATACAGTTGAATCAACCTTTGAAAAAAACAGAC
TCTTAGAAAAGATAACAAAACTAACCACCCGTGAAAAGAGAGTTTTAGAAATGCGTTTTGGTTTAGGGACAACGGCAAGA
AAAACCCAGCGGGAAATTGCCCGCACTCTGGGGATTTCCCGTTCCTATGTTTCGCGTATTGAAAAAAGGGCATTAAATAA
ATTGACCAAGGAATTCATTGCAGAAGGCTGCCAATAG

Upstream 100 bases:

>100_bases
TGAAATGAACCTATTTGGAGCCAATTCAGAAAAAAAGCAATTGCCGCCAACGGAAACAATTTAATGTTTCCGTTGTGGAG
GTATAGAAAATGAAATATTG

Downstream 100 bases:

>100_bases
GCAGCCTTCTTTATCTTCTAGTATCCCAAATCTTCCCCAATGACGACCACCGTCATATCAGACAGCATCGGTTTCCTTTT
CATTACAGAGTATATTCGGC

Product: sigma-70 region 4 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MHLRFIKKVKAEVSLYDPIGVDKEGNEISLIDILGTDPEVVADTVESTFEKNRLLEKITKLTTREKRVLEMRFGLGTTAR
KTQREIARTLGISRSYVSRIEKRALNKLTKEFIAEGCQ

Sequences:

>Translated_118_residues
MHLRFIKKVKAEVSLYDPIGVDKEGNEISLIDILGTDPEVVADTVESTFEKNRLLEKITKLTTREKRVLEMRFGLGTTAR
KTQREIARTLGISRSYVSRIEKRALNKLTKEFIAEGCQ
>Mature_118_residues
MHLRFIKKVKAEVSLYDPIGVDKEGNEISLIDILGTDPEVVADTVESTFEKNRLLEKITKLTTREKRVLEMRFGLGTTAR
KTQREIARTLGISRSYVSRIEKRALNKLTKEFIAEGCQ

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor directs the transcription of crystal protein genes, a sporulation-regulated event [H]

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014209
- InterPro:   IPR016263
- InterPro:   IPR000943
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 13482; Mature: 13482

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS00716 SIGMA70_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHLRFIKKVKAEVSLYDPIGVDKEGNEISLIDILGTDPEVVADTVESTFEKNRLLEKITK
CCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
LTTREKRVLEMRFGLGTTARKTQREIARTLGISRSYVSRIEKRALNKLTKEFIAEGCQ
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MHLRFIKKVKAEVSLYDPIGVDKEGNEISLIDILGTDPEVVADTVESTFEKNRLLEKITK
CCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
LTTREKRVLEMRFGLGTTARKTQREIARTLGISRSYVSRIEKRALNKLTKEFIAEGCQ
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]