Click here to switch to the map view.

The map label for this gene is 134298729

Identifier: 134298729

GI number: 134298729

Start: 917200

End: 918441

Strand: Reverse

Name: 134298729

Synonym: Dred_0862

Alternate gene names: NA

Gene position: 918441-917200 (Counterclockwise)

Preceding gene: 134298734

Following gene: 134298728

Centisome position: 25.45

GC content: 37.28

Gene sequence:

>1242_bases
ATGGACAAGAATACCAATAAATCCACATATAATCAACTATTTCAAACAATTTATAACGAAAAATTTTTAAGCAATGTCAA
AGAATCAGAAGTCGATGCTTACGCTAAAAAGTTAACCGTTATCAAACTAATTCAAATGATTTCTTATGCACAGTTAGAGC
AACTTAAAGGTCTCCGCCATATTAGTAACAGCTTAAATGATGATAATTTCAGCTCGGCAGTAGGTTTAGATTCAATTAGT
GCTTCACAGTTATCCCGTAAATTGAGAGATTTATCTCCTGAATTAACTCAGTCTCTATTTTCTGATATAGTCCATCAGTT
TGGTACTGAAATAGGTTTTAAATCAATAAGACAAGAATTAGGTCGCATTTATCTGATAGACTCTTCAACAATAAGCCTTT
GTCTATCCCGATACCGCTGGGCAGAGTTCAGAAAAACCAAAAGTGGAGTTAAATTACACCTCCGTATCCAGCTGCTTGAG
CAAGGGGTTCTACCAGACAAAGCCATAATTAAACCAGCTAAGTCTGCTGACAAAACACAAATGGATGCCTTGGTTGTAGA
AAAAGATGCCCTAAACGTCTTTGATCGTGGCTACTTGGATTACAAGAGGTTTGACAATTATTCTAATAATGGTACCAGAT
TCGTTAGCCGTTTAAAGAGTAACGCAATAGTTGAAACACTAGAAGAATTTCCAACAAACCAAGATAGCTTAATCAAGAAA
GACCATAAAGTAATCCTAGGCAAAGACGGTACAACCAAAATGCAGAACCCCTTGAGACTAATAGAAACAGAAGATACCGA
GGGTAAGCCTGTAATTATCATTACCAACGACTTTGAGTTAAGTGCCGAGGAAATAAGCGACATATACCGCTACCGCTGGC
AGATAGAATTATTCTTTAAGTGGATCAAACAACATTTCTGTGTAAAACATTTCTATGGTTTAAGCCAGCAGGCTGTGGAA
AACCAATTGATGATAGCACTGATTACCTACTGTTTAATGATGTTGCTTAAAAAGAAAACAGGTTACGAAGGCCCATTACT
AAAAATTCAAATGTTGCTTCATACATGCCTTTATGTAGACTTCACCAAGTTTGTACGAAAGCTCCACCACAAGTCAGGCC
AAAGTTCAAGAGGACGACGGTGTATAGACCATGAAAAAGTCTACAACATTACGTTAGTACAGGTACTACAAGGTGAGGCA
GAACACCTGGATGATCTAACTTACGACCCGATAATAGCTTAG

Upstream 100 bases:

>100_bases
TATTTTGGGATATTTTGTCTACGAATAAATGAAAAATCTCCTTATAATTGAGATATAACAGGTAGTCCTGTCCATAATCC
CAAAAATAAGGAGACCACGC

Downstream 100 bases:

>100_bases
GAATTACATGATCTGAAAAATGTGGATAAAGGACTACCTCTTAAGTGGTTGTTCCTTTAGCACAAAGAGAAATAAGGTAA
TTGGTGTATACAACCAAATT

Product: transposase, IS4 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MDKNTNKSTYNQLFQTIYNEKFLSNVKESEVDAYAKKLTVIKLIQMISYAQLEQLKGLRHISNSLNDDNFSSAVGLDSIS
ASQLSRKLRDLSPELTQSLFSDIVHQFGTEIGFKSIRQELGRIYLIDSSTISLCLSRYRWAEFRKTKSGVKLHLRIQLLE
QGVLPDKAIIKPAKSADKTQMDALVVEKDALNVFDRGYLDYKRFDNYSNNGTRFVSRLKSNAIVETLEEFPTNQDSLIKK
DHKVILGKDGTTKMQNPLRLIETEDTEGKPVIIITNDFELSAEEISDIYRYRWQIELFFKWIKQHFCVKHFYGLSQQAVE
NQLMIALITYCLMMLLKKKTGYEGPLLKIQMLLHTCLYVDFTKFVRKLHHKSGQSSRGRRCIDHEKVYNITLVQVLQGEA
EHLDDLTYDPIIA

Sequences:

>Translated_413_residues
MDKNTNKSTYNQLFQTIYNEKFLSNVKESEVDAYAKKLTVIKLIQMISYAQLEQLKGLRHISNSLNDDNFSSAVGLDSIS
ASQLSRKLRDLSPELTQSLFSDIVHQFGTEIGFKSIRQELGRIYLIDSSTISLCLSRYRWAEFRKTKSGVKLHLRIQLLE
QGVLPDKAIIKPAKSADKTQMDALVVEKDALNVFDRGYLDYKRFDNYSNNGTRFVSRLKSNAIVETLEEFPTNQDSLIKK
DHKVILGKDGTTKMQNPLRLIETEDTEGKPVIIITNDFELSAEEISDIYRYRWQIELFFKWIKQHFCVKHFYGLSQQAVE
NQLMIALITYCLMMLLKKKTGYEGPLLKIQMLLHTCLYVDFTKFVRKLHHKSGQSSRGRRCIDHEKVYNITLVQVLQGEA
EHLDDLTYDPIIA
>Mature_413_residues
MDKNTNKSTYNQLFQTIYNEKFLSNVKESEVDAYAKKLTVIKLIQMISYAQLEQLKGLRHISNSLNDDNFSSAVGLDSIS
ASQLSRKLRDLSPELTQSLFSDIVHQFGTEIGFKSIRQELGRIYLIDSSTISLCLSRYRWAEFRKTKSGVKLHLRIQLLE
QGVLPDKAIIKPAKSADKTQMDALVVEKDALNVFDRGYLDYKRFDNYSNNGTRFVSRLKSNAIVETLEEFPTNQDSLIKK
DHKVILGKDGTTKMQNPLRLIETEDTEGKPVIIITNDFELSAEEISDIYRYRWQIELFFKWIKQHFCVKHFYGLSQQAVE
NQLMIALITYCLMMLLKKKTGYEGPLLKIQMLLHTCLYVDFTKFVRKLHHKSGQSSRGRRCIDHEKVYNITLVQVLQGEA
EHLDDLTYDPIIA

Specific function: Unknown

COG id: COG3385

COG function: function code L; FOG: Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 11 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012337
- InterPro:   IPR002559
- InterPro:   IPR014736 [H]

Pfam domain/function: PF01609 Transposase_11 [H]

EC number: NA

Molecular weight: Translated: 47760; Mature: 47760

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKNTNKSTYNQLFQTIYNEKFLSNVKESEVDAYAKKLTVIKLIQMISYAQLEQLKGLRH
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISNSLNDDNFSSAVGLDSISASQLSRKLRDLSPELTQSLFSDIVHQFGTEIGFKSIRQEL
HHHCCCCCCCHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GRIYLIDSSTISLCLSRYRWAEFRKTKSGVKLHLRIQLLEQGVLPDKAIIKPAKSADKTQ
CEEEEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHCCCCCCHHHHCCCCCCCHHH
MDALVVEKDALNVFDRGYLDYKRFDNYSNNGTRFVSRLKSNAIVETLEEFPTNQDSLIKK
HHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHC
DHKVILGKDGTTKMQNPLRLIETEDTEGKPVIIITNDFELSAEEISDIYRYRWQIELFFK
CCCEEECCCCCCHHCCCCEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
WIKQHFCVKHFYGLSQQAVENQLMIALITYCLMMLLKKKTGYEGPLLKIQMLLHTCLYVD
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
FTKFVRKLHHKSGQSSRGRRCIDHEKVYNITLVQVLQGEAEHLDDLTYDPIIA
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8382825 [H]