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The map label for this gene is yqfA [C]

Identifier: 134298297

GI number: 134298297

Start: 461402

End: 462052

Strand: Reverse

Name: yqfA [C]

Synonym: Dred_0422

Alternate gene names: 134298297

Gene position: 462052-461402 (Counterclockwise)

Preceding gene: 134298298

Following gene: 134298293

Centisome position: 12.81

GC content: 41.78

Gene sequence:

>651_bases
ATGGCTAAAATTAGAGACCCCTTTAGCGGCTTGAGCCATTTGACCGGTGCCTTTTTATCGGTAGTTGGTTTAATATTATT
GGTCTATAATGCTGTTGTTTATGGTAAACCCTTACATATTGTCTCCTTTTCAATTTTCGGAGCCAGTCTTATATTGCTTT
ACACTGCCAGTGCCTTGTATCATTTATTGCCCCTTTCCCCCAAGGGAATACTCCTTTTACGTCGTATCGATCATATGATG
ATATTCGTACTAATCGCTGGTACCTATACTCCTGTTTGCCTCATTCCTCTACGCGGTGGGTGGGGATACTCTCTGCTGGT
GGGAGTTTGGGCACTGGCCATCGTTGGGATTATTATAAAACTCCTTTGGATGGAAGCACCGCGCTGGTTTTCCACACTGA
TCTATGTTGTTATGGGCTGGTTAATTGTTATTGCATTTTGGCCTTTAATACAAACAGTTACTACCGGGGGTATTGTTTGG
ATGGTATTAGGAGGAGCTTTTTATACGGTGGGAGCAGTCTTTTATGGTACTAAATGGCCACCTAACCTAGTGCCTGGTTG
GTTTGGTTTTCATGAGGTGTTTCACCTCTTTGTGATGGCTGGTAGTTTCAGTCACTTTTGGTTAATGATGAAATACATTA
TGTATATTTAA

Upstream 100 bases:

>100_bases
TTTTACTAGTGTATAATAAATGTTAGAAGGAAAATGATAAAGATTGGATAAATCATCCTCTAATAGTTTTTTATAAATAC
TAGTCTCGAGGTGAATTAAG

Downstream 100 bases:

>100_bases
ACGGTAAAAAACGGTGCGAACACGCACCGTTTTTTTAACATAATTTTTATTATAATAATGTTATCTCATACCATGCAATC
TATTCACCCTATCCTGAATG

Product: hemolysin III family channel protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MAKIRDPFSGLSHLTGAFLSVVGLILLVYNAVVYGKPLHIVSFSIFGASLILLYTASALYHLLPLSPKGILLLRRIDHMM
IFVLIAGTYTPVCLIPLRGGWGYSLLVGVWALAIVGIIIKLLWMEAPRWFSTLIYVVMGWLIVIAFWPLIQTVTTGGIVW
MVLGGAFYTVGAVFYGTKWPPNLVPGWFGFHEVFHLFVMAGSFSHFWLMMKYIMYI

Sequences:

>Translated_216_residues
MAKIRDPFSGLSHLTGAFLSVVGLILLVYNAVVYGKPLHIVSFSIFGASLILLYTASALYHLLPLSPKGILLLRRIDHMM
IFVLIAGTYTPVCLIPLRGGWGYSLLVGVWALAIVGIIIKLLWMEAPRWFSTLIYVVMGWLIVIAFWPLIQTVTTGGIVW
MVLGGAFYTVGAVFYGTKWPPNLVPGWFGFHEVFHLFVMAGSFSHFWLMMKYIMYI
>Mature_215_residues
AKIRDPFSGLSHLTGAFLSVVGLILLVYNAVVYGKPLHIVSFSIFGASLILLYTASALYHLLPLSPKGILLLRRIDHMMI
FVLIAGTYTPVCLIPLRGGWGYSLLVGVWALAIVGIIIKLLWMEAPRWFSTLIYVVMGWLIVIAFWPLIQTVTTGGIVWM
VLGGAFYTVGAVFYGTKWPPNLVPGWFGFHEVFHLFVMAGSFSHFWLMMKYIMYI

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Escherichia coli, GI1789266, Length=210, Percent_Identity=33.8095238095238, Blast_Score=116, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 24206; Mature: 24075

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKIRDPFSGLSHLTGAFLSVVGLILLVYNAVVYGKPLHIVSFSIFGASLILLYTASALY
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
HLLPLSPKGILLLRRIDHMMIFVLIAGTYTPVCLIPLRGGWGYSLLVGVWALAIVGIIIK
HHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH
LLWMEAPRWFSTLIYVVMGWLIVIAFWPLIQTVTTGGIVWMVLGGAFYTVGAVFYGTKWP
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC
PNLVPGWFGFHEVFHLFVMAGSFSHFWLMMKYIMYI
CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
>Mature Secondary Structure 
AKIRDPFSGLSHLTGAFLSVVGLILLVYNAVVYGKPLHIVSFSIFGASLILLYTASALY
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
HLLPLSPKGILLLRRIDHMMIFVLIAGTYTPVCLIPLRGGWGYSLLVGVWALAIVGIIIK
HHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH
LLWMEAPRWFSTLIYVVMGWLIVIAFWPLIQTVTTGGIVWMVLGGAFYTVGAVFYGTKWP
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC
PNLVPGWFGFHEVFHLFVMAGSFSHFWLMMKYIMYI
CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9403685 [H]