| Definition | Desulfotomaculum reducens MI-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009253 |
| Length | 3,608,104 |
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The map label for this gene is 134298254
Identifier: 134298254
GI number: 134298254
Start: 400651
End: 402690
Strand: Reverse
Name: 134298254
Synonym: Dred_0377
Alternate gene names: NA
Gene position: 402690-400651 (Counterclockwise)
Preceding gene: 134298255
Following gene: 134298253
Centisome position: 11.16
GC content: 27.4
Gene sequence:
>2040_bases ATGAATATTAAATGTATTATAGATAATATTTGCTATTCATCTAAACCACAAGGTAAAGAATGTGGAGCAGTTACAAATAG AATGACATTAGATACCGCAAAAGAATATTCTATAGAGGAAATTAAAGATAGTATTTTACAAGGTAAAACTATTCGTCCTT CTTATTGTGGAACCAAGGAAGAACAATGGAAATCTCAACAAATGTTTATGATTGATATTGATAATGAAGCGAATTTATCT GACGATATTATATTAAATGATTATGTGAAATTGGTTGAAGGTAAAAAGAATAAAGTTAGGTTCTTAGTAGGCAGTGAACA ACATAGAAGTTATAATGATATTATTAATTATTGTAAAGAGATTAATTTAATACCTAATTTTGTTTACACATCATTTAATC ATAAAGAAGAACAACATAAAATGAGATTAGTATATGTTTTAGATAATGTAATTACAGATAAAGATACAGCAAAAAGAATA CAATTATATTTAATGGATTGTATTGGTGATATTGATATACAATGTAAAAACTTAAATAGATTTTATTATGCTGGCAAAGA AATAGTATTTGATTCTGGTAATATATTAGATTCTAATGATATTATTGAATTATCTAAGGACATTAGCATTGTGAGTACCC CTTCTAAAGCCAATAAGGACAATGGCTCAGAGAAATGTCCCCACAATAATAATTATGTATTAAATAATAAACATATATAT TATTGTGGGGACGAAAACCCCCCTGCTAATGACAAGAAAGTAAAAGACAATAATTACAACATTAAAGCCATAAAAAATAG AGATATAAAATATTTAAAGGAAAAATTAAATCATCCACATATGGTATTTAATAATAATCAGGAATTTTGTGATTATATTT TTAAAGAAATAAATTTAGGAGAATTATTAGAATTTCATTATCCTAAAAATATAAGGTGTATTTTCCATGATGATAATAAT AATTCAGCAGGAATTATTAAACAACCAGATGGAACATGGATTTACAAATGTCATAGTGCAAGTTGCGGTGTATCTTATAA TCTCTTAGGAGTTATTGAAGTTTTAGGGAAATTTAGGAGCAGACCTAAAGCATATAAATTTATAAGAGAGATATTTAATT TAGAGATAGCAGAAACCGAATGGCAGAAGGAACAAAAAGAAATAATTGAACAAAATTTAAGAGCAATAGACACTGGAGAA TTGGAAAAAAAATGTCCACAAGCGTATAAGAACATTAAGAGTAATATTAAGTATTTAAGACAGTTGTTGTATATTGCAAA GGATAATGTTACTACTGAAAAAATGACTGATGATGAAGATAATGTATTATTCTTTGCTTCAACAAGGTTTATCTGTAATT CAATGGGCATAAAAGAAGGCAATATAAAAGAAATATCTAAGAAAAATACTTTATTTGCTTATCATAAATTATTGAATAAA GTTGATAATTCAGAAGTACCAGAGGATTTATTAAAGCGTAGTCAGGCAATAAGTATTAATTCACCAGATGATAAGAATAA AAAGTATAGACACGTTAATTATTATTCTATTCCAAGTTATAATAATATGTTGTTTCCTGAGATTGAACAACAAGGCCAAG CATGGAAGGAAAATAATTATACGATTAAAGGTTTAAGTAGGGAAATGTTCTTTAGAAAAGAAGGACAGAAAACTGCTGAT TGGCTCTATCCTCAATATAAGCAAGTATATGATAAGCAACAAGAAACCATAGTTGATAGAACAACCACATATAGGAGCGA TAAAAGGACAGAAATTATTGTTCATATTATTATGTGGTATTTTGATGAAATAAATTATTGTTTAGAAAAGGATATAGTTT GTGAAATAGTTTTAGATCAAGAATTACGAATTAAAAGGAGCGAAGCAGAAAGACAGTTAAAAAAATCATTACCAGAAATA TTAGATGCTTATGGTTTGAGTAGAATCAGAGCCAACAAACAAATAAAGGAAAAACTAGGGATAGTCGCTGAGGGCTATCC TTTTATTATTGTCAAAAACGATGCCTTAGAGACATTGTAG
Upstream 100 bases:
>100_bases TGAATAATTAATATTTAACCAGAGGGCTCATGTCGTGAGACAGCAATAAGTCCCTCTCTTTTTTTATGTCATTTTTTTAG AAAAGGAGAGGAAATTTAAT
Downstream 100 bases:
>100_bases TTAAATCTAAATAACTGGCTCTAAAATCGTTCAAAATTTCAATTACATAGAAATACACTACCAAGGGATTAAAGCATGGC ATACGGGGTTCAAATTCCGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 679; Mature: 679
Protein sequence:
>679_residues MNIKCIIDNICYSSKPQGKECGAVTNRMTLDTAKEYSIEEIKDSILQGKTIRPSYCGTKEEQWKSQQMFMIDIDNEANLS DDIILNDYVKLVEGKKNKVRFLVGSEQHRSYNDIINYCKEINLIPNFVYTSFNHKEEQHKMRLVYVLDNVITDKDTAKRI QLYLMDCIGDIDIQCKNLNRFYYAGKEIVFDSGNILDSNDIIELSKDISIVSTPSKANKDNGSEKCPHNNNYVLNNKHIY YCGDENPPANDKKVKDNNYNIKAIKNRDIKYLKEKLNHPHMVFNNNQEFCDYIFKEINLGELLEFHYPKNIRCIFHDDNN NSAGIIKQPDGTWIYKCHSASCGVSYNLLGVIEVLGKFRSRPKAYKFIREIFNLEIAETEWQKEQKEIIEQNLRAIDTGE LEKKCPQAYKNIKSNIKYLRQLLYIAKDNVTTEKMTDDEDNVLFFASTRFICNSMGIKEGNIKEISKKNTLFAYHKLLNK VDNSEVPEDLLKRSQAISINSPDDKNKKYRHVNYYSIPSYNNMLFPEIEQQGQAWKENNYTIKGLSREMFFRKEGQKTAD WLYPQYKQVYDKQQETIVDRTTTYRSDKRTEIIVHIIMWYFDEINYCLEKDIVCEIVLDQELRIKRSEAERQLKKSLPEI LDAYGLSRIRANKQIKEKLGIVAEGYPFIIVKNDALETL
Sequences:
>Translated_679_residues MNIKCIIDNICYSSKPQGKECGAVTNRMTLDTAKEYSIEEIKDSILQGKTIRPSYCGTKEEQWKSQQMFMIDIDNEANLS DDIILNDYVKLVEGKKNKVRFLVGSEQHRSYNDIINYCKEINLIPNFVYTSFNHKEEQHKMRLVYVLDNVITDKDTAKRI QLYLMDCIGDIDIQCKNLNRFYYAGKEIVFDSGNILDSNDIIELSKDISIVSTPSKANKDNGSEKCPHNNNYVLNNKHIY YCGDENPPANDKKVKDNNYNIKAIKNRDIKYLKEKLNHPHMVFNNNQEFCDYIFKEINLGELLEFHYPKNIRCIFHDDNN NSAGIIKQPDGTWIYKCHSASCGVSYNLLGVIEVLGKFRSRPKAYKFIREIFNLEIAETEWQKEQKEIIEQNLRAIDTGE LEKKCPQAYKNIKSNIKYLRQLLYIAKDNVTTEKMTDDEDNVLFFASTRFICNSMGIKEGNIKEISKKNTLFAYHKLLNK VDNSEVPEDLLKRSQAISINSPDDKNKKYRHVNYYSIPSYNNMLFPEIEQQGQAWKENNYTIKGLSREMFFRKEGQKTAD WLYPQYKQVYDKQQETIVDRTTTYRSDKRTEIIVHIIMWYFDEINYCLEKDIVCEIVLDQELRIKRSEAERQLKKSLPEI LDAYGLSRIRANKQIKEKLGIVAEGYPFIIVKNDALETL >Mature_679_residues MNIKCIIDNICYSSKPQGKECGAVTNRMTLDTAKEYSIEEIKDSILQGKTIRPSYCGTKEEQWKSQQMFMIDIDNEANLS DDIILNDYVKLVEGKKNKVRFLVGSEQHRSYNDIINYCKEINLIPNFVYTSFNHKEEQHKMRLVYVLDNVITDKDTAKRI QLYLMDCIGDIDIQCKNLNRFYYAGKEIVFDSGNILDSNDIIELSKDISIVSTPSKANKDNGSEKCPHNNNYVLNNKHIY YCGDENPPANDKKVKDNNYNIKAIKNRDIKYLKEKLNHPHMVFNNNQEFCDYIFKEINLGELLEFHYPKNIRCIFHDDNN NSAGIIKQPDGTWIYKCHSASCGVSYNLLGVIEVLGKFRSRPKAYKFIREIFNLEIAETEWQKEQKEIIEQNLRAIDTGE LEKKCPQAYKNIKSNIKYLRQLLYIAKDNVTTEKMTDDEDNVLFFASTRFICNSMGIKEGNIKEISKKNTLFAYHKLLNK VDNSEVPEDLLKRSQAISINSPDDKNKKYRHVNYYSIPSYNNMLFPEIEQQGQAWKENNYTIKGLSREMFFRKEGQKTAD WLYPQYKQVYDKQQETIVDRTTTYRSDKRTEIIVHIIMWYFDEINYCLEKDIVCEIVLDQELRIKRSEAERQLKKSLPEI LDAYGLSRIRANKQIKEKLGIVAEGYPFIIVKNDALETL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 79530; Mature: 79530
Theoretical pI: Translated: 7.41; Mature: 7.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIKCIIDNICYSSKPQGKECGAVTNRMTLDTAKEYSIEEIKDSILQGKTIRPSYCGTKE CCEEEEEECCCCCCCCCCCCCCHHHCCEEECCHHHCCHHHHHHHHHCCCCCCCCCCCCCH EQWKSQQMFMIDIDNEANLSDDIILNDYVKLVEGKKNKVRFLVGSEQHRSYNDIINYCKE HHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCHHCCCHHHHHHHHHH INLIPNFVYTSFNHKEEQHKMRLVYVLDNVITDKDTAKRIQLYLMDCIGDIDIQCKNLNR CCCCCCHHEECCCCCCHHHHEEEEEEEHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCE FYYAGKEIVFDSGNILDSNDIIELSKDISIVSTPSKANKDNGSEKCPHNNNYVLNNKHIY EEECCCEEEEECCCEECCCCCEEECCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCEEE YCGDENPPANDKKVKDNNYNIKAIKNRDIKYLKEKLNHPHMVFNNNQEFCDYIFKEINLG EECCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCEEECCCHHHHHHHHHHCCHH ELLEFHYPKNIRCIFHDDNNNSAGIIKQPDGTWIYKCHSASCGVSYNLLGVIEVLGKFRS HHHHHCCCCCCEEEEEECCCCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHC RPKAYKFIREIFNLEIAETEWQKEQKEIIEQNLRAIDTGELEKKCPQAYKNIKSNIKYLR CCHHHHHHHHHHCCEECHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH QLLYIAKDNVTTEKMTDDEDNVLFFASTRFICNSMGIKEGNIKEISKKNTLFAYHKLLNK HHHHHHCCCCCCCCCCCCCCCEEEEEEHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHH VDNSEVPEDLLKRSQAISINSPDDKNKKYRHVNYYSIPSYNNMLFPEIEQQGQAWKENNY CCCCCCCHHHHHCCCEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHCCCCCCCCCC TIKGLSREMFFRKEGQKTADWLYPQYKQVYDKQQETIVDRTTTYRSDKRTEIIVHIIMWY EEEECCHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH FDEINYCLEKDIVCEIVLDQELRIKRSEAERQLKKSLPEILDAYGLSRIRANKQIKEKLG HHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHC IVAEGYPFIIVKNDALETL EEECCCCEEEEECCHHCCC >Mature Secondary Structure MNIKCIIDNICYSSKPQGKECGAVTNRMTLDTAKEYSIEEIKDSILQGKTIRPSYCGTKE CCEEEEEECCCCCCCCCCCCCCHHHCCEEECCHHHCCHHHHHHHHHCCCCCCCCCCCCCH EQWKSQQMFMIDIDNEANLSDDIILNDYVKLVEGKKNKVRFLVGSEQHRSYNDIINYCKE HHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCHHCCCHHHHHHHHHH INLIPNFVYTSFNHKEEQHKMRLVYVLDNVITDKDTAKRIQLYLMDCIGDIDIQCKNLNR CCCCCCHHEECCCCCCHHHHEEEEEEEHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCE FYYAGKEIVFDSGNILDSNDIIELSKDISIVSTPSKANKDNGSEKCPHNNNYVLNNKHIY EEECCCEEEEECCCEECCCCCEEECCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCEEE YCGDENPPANDKKVKDNNYNIKAIKNRDIKYLKEKLNHPHMVFNNNQEFCDYIFKEINLG EECCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCEEECCCHHHHHHHHHHCCHH ELLEFHYPKNIRCIFHDDNNNSAGIIKQPDGTWIYKCHSASCGVSYNLLGVIEVLGKFRS HHHHHCCCCCCEEEEEECCCCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHC RPKAYKFIREIFNLEIAETEWQKEQKEIIEQNLRAIDTGELEKKCPQAYKNIKSNIKYLR CCHHHHHHHHHHCCEECHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH QLLYIAKDNVTTEKMTDDEDNVLFFASTRFICNSMGIKEGNIKEISKKNTLFAYHKLLNK HHHHHHCCCCCCCCCCCCCCCEEEEEEHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHH VDNSEVPEDLLKRSQAISINSPDDKNKKYRHVNYYSIPSYNNMLFPEIEQQGQAWKENNY CCCCCCCHHHHHCCCEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHCCCCCCCCCC TIKGLSREMFFRKEGQKTADWLYPQYKQVYDKQQETIVDRTTTYRSDKRTEIIVHIIMWY EEEECCHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH FDEINYCLEKDIVCEIVLDQELRIKRSEAERQLKKSLPEILDAYGLSRIRANKQIKEKLG HHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHC IVAEGYPFIIVKNDALETL EEECCCCEEEEECCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA