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The map label for this gene is oxyR [H]

Identifier: 134298237

GI number: 134298237

Start: 381358

End: 382299

Strand: Reverse

Name: oxyR [H]

Synonym: Dred_0360

Alternate gene names: 134298237

Gene position: 382299-381358 (Counterclockwise)

Preceding gene: 134298248

Following gene: 134298235

Centisome position: 10.6

GC content: 33.97

Gene sequence:

>942_bases
ATGAGGTTGAAACAGTTGCAATATATACTTGAGGTTAGTAAGCAAAAGTCCATAACCAAAGCTGCCAAACAATTATTTAT
TTCACAACCCTCCCTTAGTTCGGCCATAAGTAACCTAGAGCAAGAACTGAATATCAAGATTTTTATTAGAACCCATGACG
GAGTGGAACCCACCGAAATTGGACGATTTCTAATAGAAAAAGCCTCCCGAATATTTCAGGAGGTTGAAGAAATAAATAAT
ATGTGTGCAAATTCATCTGTTTGTCTAAACGGCAACCTAACTGTTTCTACCTTGCCGGCAATTAGTAACCATATCTTATT
GGAAACACTATCCATTTTTAAAGAAAAGCATCCCCAGGTAAATATATCCTTCAACGAAGACGATACCTCAAACATCATGC
GGGAAATTAAAGTAGGTAACATAGATATTGGTATACTTGCCCTTTGGGATTATGAAAAAGAAGCCTTTTTATTCAATCAA
TGCAAAAACAATATTCATTACGAAGAACTTTTTATTGATAATTTTTGTCTTTTCACAGCAACGGACCACATCCTATCGCA
AAAACAACAGGTTCATATAGAAGATATACAGAACTATCCTTTGGTGGTTTTTAAAAATAATATATCAGACAAGGATATTG
AAGTCTTTATGAAGTTAAAAGACATAAATGTTATGCGTTTTAACGATAGGGAAAGTATGAAAAAAGTGATTGCCCGTGGA
AATGCCGTAGCGCTACTGCCAAGGGTCATGTCTTTAAATGACATCTATGTTCAGTCAGGAAAAATTCGTCCCTTAACAAT
TAGCCACTTTAAAACAAATATTCATATTGGCTTTGTATATAGAAAAGATTATTTACAAATAGCACAAAAGAAATTTATTT
TGACCCTAAGAGATACTGTTAATACTCTACTAAAGGACCTTCCCCAATTACCAGCAAATTAA

Upstream 100 bases:

>100_bases
ACAGTAATAGGCCTAACCTATGTCGACAAAACTTATGTTATAATGTGTTTTGATTAGCAATATATTTCACTTATCTAACT
GCTTTTAAAGGAGAAGGACA

Downstream 100 bases:

>100_bases
AATTACACATCAATACCAACCATTTTCATTAGGGCAATGGCGTTGGTGGTCTGGGAAACCCCTTCTTTCAAGCGGTAATC
AAAGGTAATTTTATTTTCAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MRLKQLQYILEVSKQKSITKAAKQLFISQPSLSSAISNLEQELNIKIFIRTHDGVEPTEIGRFLIEKASRIFQEVEEINN
MCANSSVCLNGNLTVSTLPAISNHILLETLSIFKEKHPQVNISFNEDDTSNIMREIKVGNIDIGILALWDYEKEAFLFNQ
CKNNIHYEELFIDNFCLFTATDHILSQKQQVHIEDIQNYPLVVFKNNISDKDIEVFMKLKDINVMRFNDRESMKKVIARG
NAVALLPRVMSLNDIYVQSGKIRPLTISHFKTNIHIGFVYRKDYLQIAQKKFILTLRDTVNTLLKDLPQLPAN

Sequences:

>Translated_313_residues
MRLKQLQYILEVSKQKSITKAAKQLFISQPSLSSAISNLEQELNIKIFIRTHDGVEPTEIGRFLIEKASRIFQEVEEINN
MCANSSVCLNGNLTVSTLPAISNHILLETLSIFKEKHPQVNISFNEDDTSNIMREIKVGNIDIGILALWDYEKEAFLFNQ
CKNNIHYEELFIDNFCLFTATDHILSQKQQVHIEDIQNYPLVVFKNNISDKDIEVFMKLKDINVMRFNDRESMKKVIARG
NAVALLPRVMSLNDIYVQSGKIRPLTISHFKTNIHIGFVYRKDYLQIAQKKFILTLRDTVNTLLKDLPQLPAN
>Mature_313_residues
MRLKQLQYILEVSKQKSITKAAKQLFISQPSLSSAISNLEQELNIKIFIRTHDGVEPTEIGRFLIEKASRIFQEVEEINN
MCANSSVCLNGNLTVSTLPAISNHILLETLSIFKEKHPQVNISFNEDDTSNIMREIKVGNIDIGILALWDYEKEAFLFNQ
CKNNIHYEELFIDNFCLFTATDHILSQKQQVHIEDIQNYPLVVFKNNISDKDIEVFMKLKDINVMRFNDRESMKKVIARG
NAVALLPRVMSLNDIYVQSGKIRPLTISHFKTNIHIGFVYRKDYLQIAQKKFILTLRDTVNTLLKDLPQLPAN

Specific function: Required for the induction of a regulon of hydrogen peroxide inducible genes such as catalase and glutathione- reductase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790399, Length=251, Percent_Identity=23.9043824701195, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787530, Length=215, Percent_Identity=27.4418604651163, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788481, Length=251, Percent_Identity=23.1075697211155, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788296, Length=256, Percent_Identity=27.34375, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787601, Length=185, Percent_Identity=27.5675675675676, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI157672245, Length=300, Percent_Identity=21.6666666666667, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI87081904, Length=211, Percent_Identity=24.6445497630332, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1788887, Length=191, Percent_Identity=26.7015706806283, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788297, Length=131, Percent_Identity=29.7709923664122, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI145693105, Length=209, Percent_Identity=22.9665071770335, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1790208, Length=293, Percent_Identity=23.5494880546075, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787879, Length=254, Percent_Identity=22.0472440944882, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789173, Length=267, Percent_Identity=23.9700374531835, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789506, Length=204, Percent_Identity=24.5098039215686, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36086; Mature: 36086

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLKQLQYILEVSKQKSITKAAKQLFISQPSLSSAISNLEQELNIKIFIRTHDGVEPTEI
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEEEEECCCCCHHHH
GRFLIEKASRIFQEVEEINNMCANSSVCLNGNLTVSTLPAISNHILLETLSIFKEKHPQV
HHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEECCHHHHHHHHHHHHHHHHCCCEE
NISFNEDDTSNIMREIKVGNIDIGILALWDYEKEAFLFNQCKNNIHYEELFIDNFCLFTA
EEEECCCCHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHHCCCCHHHEEECCEEEEEH
TDHILSQKQQVHIEDIQNYPLVVFKNNISDKDIEVFMKLKDINVMRFNDRESMKKVIARG
HHHHHHHHHEEEHHHCCCCCEEEEECCCCCCCEEEEEEEECCEEEEECCHHHHHHHHHCC
NAVALLPRVMSLNDIYVQSGKIRPLTISHFKTNIHIGFVYRKDYLQIAQKKFILTLRDTV
CEEEEHHHHHCCCEEEEECCCCCEEEEEEEEEEEEEEEEEEHHHHHHHHHHHEEEHHHHH
NTLLKDLPQLPAN
HHHHHHHCCCCCC
>Mature Secondary Structure
MRLKQLQYILEVSKQKSITKAAKQLFISQPSLSSAISNLEQELNIKIFIRTHDGVEPTEI
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEEEEECCCCCHHHH
GRFLIEKASRIFQEVEEINNMCANSSVCLNGNLTVSTLPAISNHILLETLSIFKEKHPQV
HHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEECCHHHHHHHHHHHHHHHHCCCEE
NISFNEDDTSNIMREIKVGNIDIGILALWDYEKEAFLFNQCKNNIHYEELFIDNFCLFTA
EEEECCCCHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHHCCCCHHHEEECCEEEEEH
TDHILSQKQQVHIEDIQNYPLVVFKNNISDKDIEVFMKLKDINVMRFNDRESMKKVIARG
HHHHHHHHHEEEHHHCCCCCEEEEECCCCCCCEEEEEEEECCEEEEECCHHHHHHHHHCC
NAVALLPRVMSLNDIYVQSGKIRPLTISHFKTNIHIGFVYRKDYLQIAQKKFILTLRDTV
CEEEEHHHHHCCCEEEEECCCCCEEEEEEEEEEEEEEEEEEHHHHHHHHHHHEEEHHHHH
NTLLKDLPQLPAN
HHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA