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The map label for this gene is 134298181

Identifier: 134298181

GI number: 134298181

Start: 318943

End: 320502

Strand: Reverse

Name: 134298181

Synonym: Dred_0303

Alternate gene names: NA

Gene position: 320502-318943 (Counterclockwise)

Preceding gene: 134298184

Following gene: 134298180

Centisome position: 8.88

GC content: 41.47

Gene sequence:

>1560_bases
ATGATCAAGTACCGGGAAATCCTGAGGCTTCATGCCCAGGGTCTTAGTATGAGAGGCATTGCCGCAAGTTGCTCCAACTC
AAGGAACACTGTGAGCGAAGTTCTCAAACGAGCTGAAAGTCAGGGTATTTCTTGGCCATTTGAGAAGGATATGTCAGATG
GTCAGCTCCAGGATGTTTTGTTTCCTGAAAAGAATGTTTCTCTTACCTTCAGGAGAAGGCCTGACTGCGAGTATATCCAC
AAGGAAATGGCTAAAAGTGGGGTAACACTTTCGCTTTTGTGGGATGAATATTGCCAGAACTGCAGGCAGAATCATAAGAT
ACCTTATAGTTATCGACAATTTTGCCGGTTTTATCATGATTATGCCAATACTACAAAAGCCACTATGAGAATAAAAAGAA
AGCCCGGTGAATTAATGGAAGTAGACTGGGCAGGCCAGACTATGTCCATTAAAGATAACATCACAGGAGAAGATATCACC
GCTTACGTATTTGTTGCAGCGTTACCCTGCAGTCAATATGCTTATGTAGAAGCTTTTCTCTCGATGGAAACCGAGAGTTG
GATCACGGCTCACATTCATGCCTTCAAGTTCTTCGGTGGTGTGACCAGAATGATTGTACCGGACAACTTAAAAACTGGTG
TGGAAAAGTCCTCCCAGACTGATCCCATTATTAACCGCACGTATCAGGAAATGGCTGAACATTACAACACCTCTATTATG
CCAGCCAGAGTACGTCACCCTAAAGATAAACCTAGTGCAGAAGGTACTGTAGGTATCATCTCCACTTGGATTATTGCCTC
TCTCCGCAATCAGCAGTTTTTCTCAATTAAAGAACTCAATGAAGCCATCCACAAAAAATTAACGGAATACAACACCAAAT
CTTTTCAAAAAAAGCCAGGAAACAGGCTTTCCGCTTTCACGGAAGAGGAGAAATTTGCGCTAATTCCACTGCCTGCTTCC
CCATACGAGCTAGCTACTTGGAAAAAAGCCACCGTACAATATGATTATCATATATCTGTGGATAAAATATATTACTCAGT
TCCTTATGAATATATCAAACAACTAGTTGATGTCCGGATTACGAAGAATGTGGTGGAAATTTTCTTCAAACATTTCCGTA
TTGCCTCCCATAAAAGGCTTTCTGGGAAAGTAGGACAAGCATCCACAATTCCAGAACACATGCCTGATAATCATAAAAAA
TACATTGAGTTCAACCAAGATTCAATTCTTGAATGGGCAAGTAAAGTTGGATCACACACATTAACCACTGTTAAAAGCAT
TTTAGCCTCTTACAAGACAGAAAAGCAAGGACTTAAATCTTGCTTAGCACTAATGAAGCTAGCTGATAAACATTCGGTTG
AACGCATCGAAGCCGCATGTAAAAGGGCTCTAGACTATACCCCCAGACCCACCCTAAAGAGTATTCAAACCATCCTAAAG
ACGGGCCAAGATAAATTATCTGAGGTGAATCCAACTGTGGATAACACAACTAAAAAGACAGCCAGCTCTTACGGATTCAC
TAGGGGAGCCGCTTACTATGGAGGTAAAAACAATGACTAA

Upstream 100 bases:

>100_bases
TATGACATGATTTTAAGCCAGTTCTGCCATCGAAAGAGCCACCTCTTGTATAATCAACACTGTACATAAAAGTACAATTC
TGATTACAGGAGGTTTTTTT

Downstream 100 bases:

>100_bases
CGAAAATACAATATCAAAATTAAATGATATGCGTTTAACTGCAATGGCCGAAACCTACAGGAAACAGTTGCATGATACCG
ATTACCGGGAACTATCCTTT

Product: integrase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 519; Mature: 519

Protein sequence:

>519_residues
MIKYREILRLHAQGLSMRGIAASCSNSRNTVSEVLKRAESQGISWPFEKDMSDGQLQDVLFPEKNVSLTFRRRPDCEYIH
KEMAKSGVTLSLLWDEYCQNCRQNHKIPYSYRQFCRFYHDYANTTKATMRIKRKPGELMEVDWAGQTMSIKDNITGEDIT
AYVFVAALPCSQYAYVEAFLSMETESWITAHIHAFKFFGGVTRMIVPDNLKTGVEKSSQTDPIINRTYQEMAEHYNTSIM
PARVRHPKDKPSAEGTVGIISTWIIASLRNQQFFSIKELNEAIHKKLTEYNTKSFQKKPGNRLSAFTEEEKFALIPLPAS
PYELATWKKATVQYDYHISVDKIYYSVPYEYIKQLVDVRITKNVVEIFFKHFRIASHKRLSGKVGQASTIPEHMPDNHKK
YIEFNQDSILEWASKVGSHTLTTVKSILASYKTEKQGLKSCLALMKLADKHSVERIEAACKRALDYTPRPTLKSIQTILK
TGQDKLSEVNPTVDNTTKKTASSYGFTRGAAYYGGKNND

Sequences:

>Translated_519_residues
MIKYREILRLHAQGLSMRGIAASCSNSRNTVSEVLKRAESQGISWPFEKDMSDGQLQDVLFPEKNVSLTFRRRPDCEYIH
KEMAKSGVTLSLLWDEYCQNCRQNHKIPYSYRQFCRFYHDYANTTKATMRIKRKPGELMEVDWAGQTMSIKDNITGEDIT
AYVFVAALPCSQYAYVEAFLSMETESWITAHIHAFKFFGGVTRMIVPDNLKTGVEKSSQTDPIINRTYQEMAEHYNTSIM
PARVRHPKDKPSAEGTVGIISTWIIASLRNQQFFSIKELNEAIHKKLTEYNTKSFQKKPGNRLSAFTEEEKFALIPLPAS
PYELATWKKATVQYDYHISVDKIYYSVPYEYIKQLVDVRITKNVVEIFFKHFRIASHKRLSGKVGQASTIPEHMPDNHKK
YIEFNQDSILEWASKVGSHTLTTVKSILASYKTEKQGLKSCLALMKLADKHSVERIEAACKRALDYTPRPTLKSIQTILK
TGQDKLSEVNPTVDNTTKKTASSYGFTRGAAYYGGKNND
>Mature_519_residues
MIKYREILRLHAQGLSMRGIAASCSNSRNTVSEVLKRAESQGISWPFEKDMSDGQLQDVLFPEKNVSLTFRRRPDCEYIH
KEMAKSGVTLSLLWDEYCQNCRQNHKIPYSYRQFCRFYHDYANTTKATMRIKRKPGELMEVDWAGQTMSIKDNITGEDIT
AYVFVAALPCSQYAYVEAFLSMETESWITAHIHAFKFFGGVTRMIVPDNLKTGVEKSSQTDPIINRTYQEMAEHYNTSIM
PARVRHPKDKPSAEGTVGIISTWIIASLRNQQFFSIKELNEAIHKKLTEYNTKSFQKKPGNRLSAFTEEEKFALIPLPAS
PYELATWKKATVQYDYHISVDKIYYSVPYEYIKQLVDVRITKNVVEIFFKHFRIASHKRLSGKVGQASTIPEHMPDNHKK
YIEFNQDSILEWASKVGSHTLTTVKSILASYKTEKQGLKSCLALMKLADKHSVERIEAACKRALDYTPRPTLKSIQTILK
TGQDKLSEVNPTVDNTTKKTASSYGFTRGAAYYGGKNND

Specific function: Unknown

COG id: COG4584

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR017895
- InterPro:   IPR001584
- InterPro:   IPR013249
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 59405; Mature: 59405

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKYREILRLHAQGLSMRGIAASCSNSRNTVSEVLKRAESQGISWPFEKDMSDGQLQDVL
CCCHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC
FPEKNVSLTFRRRPDCEYIHKEMAKSGVTLSLLWDEYCQNCRQNHKIPYSYRQFCRFYHD
CCCCCCEEEEECCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
YANTTKATMRIKRKPGELMEVDWAGQTMSIKDNITGEDITAYVFVAALPCSQYAYVEAFL
HHCCHHHHEEEECCCCCEEEEECCCCEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
SMETESWITAHIHAFKFFGGVTRMIVPDNLKTGVEKSSQTDPIINRTYQEMAEHYNTSIM
HHCCCHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCC
PARVRHPKDKPSAEGTVGIISTWIIASLRNQQFFSIKELNEAIHKKLTEYNTKSFQKKPG
CHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCC
NRLSAFTEEEKFALIPLPASPYELATWKKATVQYDYHISVDKIYYSVPYEYIKQLVDVRI
CHHHCCCCCCCEEEEECCCCCCHHHCCEEEEEEEEEEEEHHHEEEECCHHHHHHHHHHHH
TKNVVEIFFKHFRIASHKRLSGKVGQASTIPEHMPDNHKKYIEFNQDSILEWASKVGSHT
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHCCHH
LTTVKSILASYKTEKQGLKSCLALMKLADKHSVERIEAACKRALDYTPRPTLKSIQTILK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
TGQDKLSEVNPTVDNTTKKTASSYGFTRGAAYYGGKNND
CCHHHHHHCCCCCCCCHHHHHHHCCCCCCCEECCCCCCC
>Mature Secondary Structure
MIKYREILRLHAQGLSMRGIAASCSNSRNTVSEVLKRAESQGISWPFEKDMSDGQLQDVL
CCCHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC
FPEKNVSLTFRRRPDCEYIHKEMAKSGVTLSLLWDEYCQNCRQNHKIPYSYRQFCRFYHD
CCCCCCEEEEECCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
YANTTKATMRIKRKPGELMEVDWAGQTMSIKDNITGEDITAYVFVAALPCSQYAYVEAFL
HHCCHHHHEEEECCCCCEEEEECCCCEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
SMETESWITAHIHAFKFFGGVTRMIVPDNLKTGVEKSSQTDPIINRTYQEMAEHYNTSIM
HHCCCHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCC
PARVRHPKDKPSAEGTVGIISTWIIASLRNQQFFSIKELNEAIHKKLTEYNTKSFQKKPG
CHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCC
NRLSAFTEEEKFALIPLPASPYELATWKKATVQYDYHISVDKIYYSVPYEYIKQLVDVRI
CHHHCCCCCCCEEEEECCCCCCHHHCCEEEEEEEEEEEEHHHEEEECCHHHHHHHHHHHH
TKNVVEIFFKHFRIASHKRLSGKVGQASTIPEHMPDNHKKYIEFNQDSILEWASKVGSHT
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHCCHH
LTTVKSILASYKTEKQGLKSCLALMKLADKHSVERIEAACKRALDYTPRPTLKSIQTILK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
TGQDKLSEVNPTVDNTTKKTASSYGFTRGAAYYGGKNND
CCHHHHHHCCCCCCCCHHHHHHHCCCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]