Click here to switch to the map view.

The map label for this gene is abrB [H]

Identifier: 134297943

GI number: 134297943

Start: 71256

End: 71516

Strand: Reverse

Name: abrB [H]

Synonym: Dred_0064

Alternate gene names: 134297943

Gene position: 71516-71256 (Counterclockwise)

Preceding gene: 134297947

Following gene: 134297936

Centisome position: 1.98

GC content: 42.91

Gene sequence:

>261_bases
ATGAAATCCACAGGTATTGTTCGTAAGGTGGACGAGCTGGGTAGGGTTGTTATTCCCATCGAGTTGCGCCGTACACTGGG
CATAGATGAAAAAGACGCCCTAGAAATCTACGTAGACAATGAGAAAATTATTTTGCGCAAATACGAGCCGGCTTGTGTGT
TCTGTGGTAATGCTTCAGATGTTACTCACTACAAAGGAAAAATGGTATGTCATGAGTGCATTGCTGCCATGGGAGAATCC
GTAAAAAAAGAAGTAGTATAG

Upstream 100 bases:

>100_bases
AAAATAAAAGTAAAATATTGACTATTACGGTTAGTACTGGTATGATTAGTTGTAGTAAAATCTGGTATCGTGTCGATTGC
ATAAGGGGAGGGAAAGCGGA

Downstream 100 bases:

>100_bases
CAAAATGAGGGACTGAAGTCTCTCATTTTGCTATACTACTTCTTTTTTTCTCTTTTACTTATCTTCCCCGTGGACCATGG
CATAGACTTCTCGCTTTGGC

Product: AbrB family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 86; Mature: 86

Protein sequence:

>86_residues
MKSTGIVRKVDELGRVVIPIELRRTLGIDEKDALEIYVDNEKIILRKYEPACVFCGNASDVTHYKGKMVCHECIAAMGES
VKKEVV

Sequences:

>Translated_86_residues
MKSTGIVRKVDELGRVVIPIELRRTLGIDEKDALEIYVDNEKIILRKYEPACVFCGNASDVTHYKGKMVCHECIAAMGES
VKKEVV
>Mature_86_residues
MKSTGIVRKVDELGRVVIPIELRRTLGIDEKDALEIYVDNEKIILRKYEPACVFCGNASDVTHYKGKMVCHECIAAMGES
VKKEVV

Specific function: Ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. It controls the expression of genes spovG and tycA. AbrB binds to the tycA

COG id: COG2002

COG function: function code K; Regulators of stationary/sporulation gene expression

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis abh and spoVT [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006339
- InterPro:   IPR007159 [H]

Pfam domain/function: PF04014 SpoVT_AbrB [H]

EC number: NA

Molecular weight: Translated: 9653; Mature: 9653

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
8.1 %Cys+Met (Translated Protein)
4.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
8.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSTGIVRKVDELGRVVIPIELRRTLGIDEKDALEIYVDNEKIILRKYEPACVFCGNASD
CCCCCHHHHHHHCCCEEEEEEEHHHCCCCCCCCEEEEECCCEEEEEECCCEEEEECCCCC
VTHYKGKMVCHECIAAMGESVKKEVV
CCCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKSTGIVRKVDELGRVVIPIELRRTLGIDEKDALEIYVDNEKIILRKYEPACVFCGNASD
CCCCCHHHHHHHCCCEEEEEEEHHHCCCCCCCCEEEEECCCEEEEEECCCEEEEECCCCC
VTHYKGKMVCHECIAAMGESVKKEVV
CCCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3145384; 2554317; 7584024; 9384377; 2504584; 1908787 [H]