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The map label for this gene is gerKA [H]

Identifier: 134297933

GI number: 134297933

Start: 62436

End: 64070

Strand: Reverse

Name: gerKA [H]

Synonym: Dred_0054

Alternate gene names: 134297933

Gene position: 64070-62436 (Counterclockwise)

Preceding gene: 134297934

Following gene: 134297932

Centisome position: 1.78

GC content: 47.95

Gene sequence:

>1635_bases
ATGGCTTTCTTCCAAAGCTTAAAAAATCTGGGTGCTGCTAAAAAGAGAAAAAAACCGAGCCCGCCCGGCCAAGACAAACC
TGGTGAAAATATAAACCCAACTCAGCCCTATACCAGGGAAGAGCTAATCTCCCTTAAGGTAGATCATAACCTTAACCGTA
ACCTTAACCATATTAATAATCTCCTGGGCCATAATGCCGACTATGTTCAGAGAAAATTCGTCCTGGGCCACGACCAAACC
CTAGAGGCTGCCATTATTTTTCTGGACAGCATGATTGACCCTGCCCTGCTGGGTGGAGAAATCATGAAGCCGTTGCTGGA
ACCCCGCCTGAAAGACAGCTCCGGTAGCGAAATGCTAAAATTATTAACCAACGGCGGACTTATTTCCCGGGCCCAAATGG
AAACCTTCAACCATTTCCAGGGAGTGGTATCTAACGTTCTTACCGGCGAAGTAGCCCTGTTTGTGGAAGGCTTTGCCCAT
TGTTTTATTATTAGCAGCAAAGGCTATAAGAGCAGAAGCATTCCGGAACCCCATTACGAAAATGCCGTACGGGGACCCCG
GGAAGCCTTTGTGGAGAATATTTCCATTAACATTAGCCTGCTGCGTAAAAGGCTGGTAACCCCAAATCTAGTGTTTGAAA
ATATTACGCTGGGCAAGATCAGCAGCACCAACATTTCCATTGTCTATATCAAAGGCCTCGCTTCCGAGGGACTAATTGAG
GAAGTACGTGAAAGGCTGAGGAGAATTGAAACGGATGCTATCCTGGAGAGCGGTTACCTGGAAAGCTTTATCGTAGACAA
TCCCCGTTCTCCCTTTCCCCAATTGGGTAATACAGAGCGACCGGACCGGGTGGCAGGGGATTTATTGGAAGGCAGGGTGG
CAATATTAACCGATACCACCCCCCTTGTTCTAATCGCTCCGGGTGAGTTAATGTCCTTCCTGCAAACGTCAGAAGATTAT
TATACTAAGTACCAGTGGTCAACCTTTGTCCGGTGGTTAAGATTTTTCTCTTTATTTTTGGCCTTAACCTTACCTTCTTT
ATACATAGCCATTACCACCTTTCACCAAGAAATGCTGCCCACCACCTTGTTTGTCAGCGTAGCTGCAGCCCGAAAGGGCG
TACCCTTTCCGGCGGTGGTAGAAGCCTTAATAATGGAAGTTTTATTTGAGACCATTCGGGAAGCAGCAATTCGTCTACCG
GCTAATATTTCAAACACCATCAGCATTGTTGGGGCACTGGTTCTTGGCCAGGCGGCGGTCCAGGCCAATATAGTATCCCC
GCTAATGATTATTATTGTAGCCGCAACGGGTGTTGCCTCCTTTACCATACCCCAGTACAGCCTAAGCACTGCCGTTCGGC
TAATTCGTTTTCCCTTAATGCTTCTTAGCGCCGTTCTGGGCCTTTTCGGGTTGATGGTAGGCCTACTGGCCGTATTGCTG
CACCTATGTTCATTAAGGAGCTTCGGGGTTCCCTACCTTTCACCCATTGCCCCCTTTAACTGGGATGGTATCAAGGATAC
CCTGTTAAGGTCAGCCCACTGGAGCAAAGTTAATCGCCCTCAGGAGTTGGTACAGCGCAACAGGCAGCGCATGAAGGAAA
ATCTACAACCGGGTACACCGGATAAACTAGGCTAA

Upstream 100 bases:

>100_bases
CGCTTTTTATTACTTTTGCCAACTTAGGTCTCACCTTAATTTTATTCAGTGTTTCATTGATTCGTCACAGAAACAAAAAT
GTAAAGGGGAGAACTTAAAC

Downstream 100 bases:

>100_bases
AGAAAGGAGCAGCCATGAAAGCTAAGTTAATCCCCTTGCTGGCGATCTTTTTTATAACTTTCTTTAGTTCTGGCTGCTGG
GATCACCGGGAGGCAGAAAA

Product: spore germination protein GerA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 544; Mature: 543

Protein sequence:

>544_residues
MAFFQSLKNLGAAKKRKKPSPPGQDKPGENINPTQPYTREELISLKVDHNLNRNLNHINNLLGHNADYVQRKFVLGHDQT
LEAAIIFLDSMIDPALLGGEIMKPLLEPRLKDSSGSEMLKLLTNGGLISRAQMETFNHFQGVVSNVLTGEVALFVEGFAH
CFIISSKGYKSRSIPEPHYENAVRGPREAFVENISINISLLRKRLVTPNLVFENITLGKISSTNISIVYIKGLASEGLIE
EVRERLRRIETDAILESGYLESFIVDNPRSPFPQLGNTERPDRVAGDLLEGRVAILTDTTPLVLIAPGELMSFLQTSEDY
YTKYQWSTFVRWLRFFSLFLALTLPSLYIAITTFHQEMLPTTLFVSVAAARKGVPFPAVVEALIMEVLFETIREAAIRLP
ANISNTISIVGALVLGQAAVQANIVSPLMIIIVAATGVASFTIPQYSLSTAVRLIRFPLMLLSAVLGLFGLMVGLLAVLL
HLCSLRSFGVPYLSPIAPFNWDGIKDTLLRSAHWSKVNRPQELVQRNRQRMKENLQPGTPDKLG

Sequences:

>Translated_544_residues
MAFFQSLKNLGAAKKRKKPSPPGQDKPGENINPTQPYTREELISLKVDHNLNRNLNHINNLLGHNADYVQRKFVLGHDQT
LEAAIIFLDSMIDPALLGGEIMKPLLEPRLKDSSGSEMLKLLTNGGLISRAQMETFNHFQGVVSNVLTGEVALFVEGFAH
CFIISSKGYKSRSIPEPHYENAVRGPREAFVENISINISLLRKRLVTPNLVFENITLGKISSTNISIVYIKGLASEGLIE
EVRERLRRIETDAILESGYLESFIVDNPRSPFPQLGNTERPDRVAGDLLEGRVAILTDTTPLVLIAPGELMSFLQTSEDY
YTKYQWSTFVRWLRFFSLFLALTLPSLYIAITTFHQEMLPTTLFVSVAAARKGVPFPAVVEALIMEVLFETIREAAIRLP
ANISNTISIVGALVLGQAAVQANIVSPLMIIIVAATGVASFTIPQYSLSTAVRLIRFPLMLLSAVLGLFGLMVGLLAVLL
HLCSLRSFGVPYLSPIAPFNWDGIKDTLLRSAHWSKVNRPQELVQRNRQRMKENLQPGTPDKLG
>Mature_543_residues
AFFQSLKNLGAAKKRKKPSPPGQDKPGENINPTQPYTREELISLKVDHNLNRNLNHINNLLGHNADYVQRKFVLGHDQTL
EAAIIFLDSMIDPALLGGEIMKPLLEPRLKDSSGSEMLKLLTNGGLISRAQMETFNHFQGVVSNVLTGEVALFVEGFAHC
FIISSKGYKSRSIPEPHYENAVRGPREAFVENISINISLLRKRLVTPNLVFENITLGKISSTNISIVYIKGLASEGLIEE
VRERLRRIETDAILESGYLESFIVDNPRSPFPQLGNTERPDRVAGDLLEGRVAILTDTTPLVLIAPGELMSFLQTSEDYY
TKYQWSTFVRWLRFFSLFLALTLPSLYIAITTFHQEMLPTTLFVSVAAARKGVPFPAVVEALIMEVLFETIREAAIRLPA
NISNTISIVGALVLGQAAVQANIVSPLMIIIVAATGVASFTIPQYSLSTAVRLIRFPLMLLSAVLGLFGLMVGLLAVLLH
LCSLRSFGVPYLSPIAPFNWDGIKDTLLRSAHWSKVNRPQELVQRNRQRMKENLQPGTPDKLG

Specific function: Involved in the germination response to the combination of glucose, fructose, L-asparagine, and KCl [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004995 [H]

Pfam domain/function: PF03323 GerA [H]

EC number: NA

Molecular weight: Translated: 60381; Mature: 60250

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFFQSLKNLGAAKKRKKPSPPGQDKPGENINPTQPYTREELISLKVDHNLNRNLNHINN
CHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHEEEEECCCCCCCHHHHHH
LLGHNADYVQRKFVLGHDQTLEAAIIFLDSMIDPALLGGEIMKPLLEPRLKDSSGSEMLK
HHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHCHHHHHHHHCCCCCCCCHHHHHH
LLTNGGLISRAQMETFNHFQGVVSNVLTGEVALFVEGFAHCFIISSKGYKSRSIPEPHYE
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHH
NAVRGPREAFVENISINISLLRKRLVTPNLVFENITLGKISSTNISIVYIKGLASEGLIE
HHCCCHHHHHHHHCCCHHHHHHHHHCCCCCEECCCEECCCCCCCEEEEEEECCCCCCHHH
EVRERLRRIETDAILESGYLESFIVDNPRSPFPQLGNTERPDRVAGDLLEGRVAILTDTT
HHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCC
PLVLIAPGELMSFLQTSEDYYTKYQWSTFVRWLRFFSLFLALTLPSLYIAITTFHQEMLP
CEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TTLFVSVAAARKGVPFPAVVEALIMEVLFETIREAAIRLPANISNTISIVGALVLGQAAV
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
QANIVSPLMIIIVAATGVASFTIPQYSLSTAVRLIRFPLMLLSAVLGLFGLMVGLLAVLL
HHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HLCSLRSFGVPYLSPIAPFNWDGIKDTLLRSAHWSKVNRPQELVQRNRQRMKENLQPGTP
HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC
DKLG
CCCC
>Mature Secondary Structure 
AFFQSLKNLGAAKKRKKPSPPGQDKPGENINPTQPYTREELISLKVDHNLNRNLNHINN
HHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHEEEEECCCCCCCHHHHHH
LLGHNADYVQRKFVLGHDQTLEAAIIFLDSMIDPALLGGEIMKPLLEPRLKDSSGSEMLK
HHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHCHHHHHHHHCCCCCCCCHHHHHH
LLTNGGLISRAQMETFNHFQGVVSNVLTGEVALFVEGFAHCFIISSKGYKSRSIPEPHYE
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHH
NAVRGPREAFVENISINISLLRKRLVTPNLVFENITLGKISSTNISIVYIKGLASEGLIE
HHCCCHHHHHHHHCCCHHHHHHHHHCCCCCEECCCEECCCCCCCEEEEEEECCCCCCHHH
EVRERLRRIETDAILESGYLESFIVDNPRSPFPQLGNTERPDRVAGDLLEGRVAILTDTT
HHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCC
PLVLIAPGELMSFLQTSEDYYTKYQWSTFVRWLRFFSLFLALTLPSLYIAITTFHQEMLP
CEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TTLFVSVAAARKGVPFPAVVEALIMEVLFETIREAAIRLPANISNTISIVGALVLGQAAV
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
QANIVSPLMIIIVAATGVASFTIPQYSLSTAVRLIRFPLMLLSAVLGLFGLMVGLLAVLL
HHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HLCSLRSFGVPYLSPIAPFNWDGIKDTLLRSAHWSKVNRPQELVQRNRQRMKENLQPGTP
HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC
DKLG
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]