Click here to switch to the map view.

The map label for this gene is gerBC [H]

Identifier: 134297932

GI number: 134297932

Start: 61213

End: 62421

Strand: Reverse

Name: gerBC [H]

Synonym: Dred_0053

Alternate gene names: 134297932

Gene position: 62421-61213 (Counterclockwise)

Preceding gene: 134297933

Following gene: 134297931

Centisome position: 1.73

GC content: 44.91

Gene sequence:

>1209_bases
ATGAAAGCTAAGTTAATCCCCTTGCTGGCGATCTTTTTTATAACTTTCTTTAGTTCTGGCTGCTGGGATCACCGGGAGGC
AGAAAATACTGGAATTATTATAGGTGCAGGCATTGATCAAACAGAAGACGGCAAAATTATAGTAATTGGCCAAACAATGA
TACCTCAGCAACCCGGGGCAGGGGGCGGGGACAAAACCGGTGAGGTTATATCCTTTCACAACTGGTATGCCACTGGCGAA
ACTCTGTTTGATGCCATTCGAGATCTAACACTCCAGTCCCCCACCCCCCTTTTTTGGTCCCATGCACAAGTTATTGTGTT
TTCAGAAAGGTTAGCCAGAAAGGGCTTGCTGGAGGCTATTGATTTTTTAGAGAGAGATCCGGAAATTAAGCAAAGTACCT
GGGTGTTAATTGCCCAGGGCGATTTAAATGACGTTATGCAAACAAGAGAAATGGCCTTTCAGCCCCCCACTAAAATTATG
GCTGATGTCATCAAAACAAGGAATCGCAACGCCAAGTACGCCGTAACTAGTTTAGGTGATTTTCTGAGGACGATGGATAA
TCCCGACACACAGCCCTTCACGGCCGGGGTTAATTTTTTTAAGGGCCCCATGAAGGATATGAACAAACTTACCTCCAGAG
TCCAGGAAGCACCCCGGGAATATGAAATAAAAATTAGTGATACAGCCGTATTCCATGAGGATAAAATGGTGGGCTGGTTT
AACACCAAGGAAAGCAGAGGATTGTTATTTATCAAGGGCGAGATTAAATCTGGTGTTCTGGTATTAGAGAAGGAAAAACA
AAGGCTTTCTGTAGAAATGTTTGGCTCCTCTAGTAAGCTGAAGCCCGTGGTACAGGACGGCCAACTGGTGATGAAGGTTG
AGATAAAAGTCACCGGTAGTCTTGCTGAAGCCCTCCCCGGCATCTATGAGCTGGATAAAAAGGTAGTTAAAGATATTGAG
CAGCAAATGAATACGGTAGTTAAAGAGGAAGTAATGGCCGCAATAACCAGAGCCCAGGAACTAAACACCGATGTCCTGGG
TTTTGGCCGAGTTGTCCACCAACATTTTCCCAAAGAATGGGATAAGGAATTGGCCCAGAGCTGGCCTGAGCTGTTTAAGG
ATCTGGAGGTGGAAGTGACGGTAGATGGCAAAATAAAAACTACCGGCCTGATTACTACCTCTGTTAATCCTCGGAAAAAA
AACAAGTAG

Upstream 100 bases:

>100_bases
TTAATCGCCCTCAGGAGTTGGTACAGCGCAACAGGCAGCGCATGAAGGAAAATCTACAACCGGGTACACCGGATAAACTA
GGCTAAAGAAAGGAGCAGCC

Downstream 100 bases:

>100_bases
GCGGTGAAAGCTATGCTGTTCAACCTGTTATTCATTTCCCTGGCTTATATCATCATTATTATATTGGAGGTACCCCGACT
GGTGGTGCAAAAAATGTGGC

Product: spore germination B3 GerAC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 402

Protein sequence:

>402_residues
MKAKLIPLLAIFFITFFSSGCWDHREAENTGIIIGAGIDQTEDGKIIVIGQTMIPQQPGAGGGDKTGEVISFHNWYATGE
TLFDAIRDLTLQSPTPLFWSHAQVIVFSERLARKGLLEAIDFLERDPEIKQSTWVLIAQGDLNDVMQTREMAFQPPTKIM
ADVIKTRNRNAKYAVTSLGDFLRTMDNPDTQPFTAGVNFFKGPMKDMNKLTSRVQEAPREYEIKISDTAVFHEDKMVGWF
NTKESRGLLFIKGEIKSGVLVLEKEKQRLSVEMFGSSSKLKPVVQDGQLVMKVEIKVTGSLAEALPGIYELDKKVVKDIE
QQMNTVVKEEVMAAITRAQELNTDVLGFGRVVHQHFPKEWDKELAQSWPELFKDLEVEVTVDGKIKTTGLITTSVNPRKK
NK

Sequences:

>Translated_402_residues
MKAKLIPLLAIFFITFFSSGCWDHREAENTGIIIGAGIDQTEDGKIIVIGQTMIPQQPGAGGGDKTGEVISFHNWYATGE
TLFDAIRDLTLQSPTPLFWSHAQVIVFSERLARKGLLEAIDFLERDPEIKQSTWVLIAQGDLNDVMQTREMAFQPPTKIM
ADVIKTRNRNAKYAVTSLGDFLRTMDNPDTQPFTAGVNFFKGPMKDMNKLTSRVQEAPREYEIKISDTAVFHEDKMVGWF
NTKESRGLLFIKGEIKSGVLVLEKEKQRLSVEMFGSSSKLKPVVQDGQLVMKVEIKVTGSLAEALPGIYELDKKVVKDIE
QQMNTVVKEEVMAAITRAQELNTDVLGFGRVVHQHFPKEWDKELAQSWPELFKDLEVEVTVDGKIKTTGLITTSVNPRKK
NK
>Mature_402_residues
MKAKLIPLLAIFFITFFSSGCWDHREAENTGIIIGAGIDQTEDGKIIVIGQTMIPQQPGAGGGDKTGEVISFHNWYATGE
TLFDAIRDLTLQSPTPLFWSHAQVIVFSERLARKGLLEAIDFLERDPEIKQSTWVLIAQGDLNDVMQTREMAFQPPTKIM
ADVIKTRNRNAKYAVTSLGDFLRTMDNPDTQPFTAGVNFFKGPMKDMNKLTSRVQEAPREYEIKISDTAVFHEDKMVGWF
NTKESRGLLFIKGEIKSGVLVLEKEKQRLSVEMFGSSSKLKPVVQDGQLVMKVEIKVTGSLAEALPGIYELDKKVVKDIE
QQMNTVVKEEVMAAITRAQELNTDVLGFGRVVHQHFPKEWDKELAQSWPELFKDLEVEVTVDGKIKTTGLITTSVNPRKK
NK

Specific function: Involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AGFK). Cannot stimulate germination in the absence of gerD and gerK gene products (fructose and glucose receptors respectively) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKC lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008844 [H]

Pfam domain/function: PF05504 Spore_GerAC [H]

EC number: NA

Molecular weight: Translated: 45166; Mature: 45166

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAKLIPLLAIFFITFFSSGCWDHREAENTGIIIGAGIDQTEDGKIIVIGQTMIPQQPGA
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCC
GGGDKTGEVISFHNWYATGETLFDAIRDLTLQSPTPLFWSHAQVIVFSERLARKGLLEAI
CCCCCCCCEEEEECEECCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHH
DFLERDPEIKQSTWVLIAQGDLNDVMQTREMAFQPPTKIMADVIKTRNRNAKYAVTSLGD
HHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEHHHHHH
FLRTMDNPDTQPFTAGVNFFKGPMKDMNKLTSRVQEAPREYEIKISDTAVFHEDKMVGWF
HHHHCCCCCCCCEECCCHHHCCHHHHHHHHHHHHHHCCCCEEEEEECEEEEECCCEEEEE
NTKESRGLLFIKGEIKSGVLVLEKEKQRLSVEMFGSSSKLKPVVQDGQLVMKVEIKVTGS
CCCCCCCEEEEEECCCCCEEEEECCCHHEEEEEECCCCCCCCEECCCEEEEEEEEEECCC
LAEALPGIYELDKKVVKDIEQQMNTVVKEEVMAAITRAQELNTDVLGFGRVVHQHFPKEW
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHH
DKELAQSWPELFKDLEVEVTVDGKIKTTGLITTSVNPRKKNK
HHHHHHHHHHHHHCCEEEEEECCEEEEEEEEEECCCCCCCCC
>Mature Secondary Structure
MKAKLIPLLAIFFITFFSSGCWDHREAENTGIIIGAGIDQTEDGKIIVIGQTMIPQQPGA
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCC
GGGDKTGEVISFHNWYATGETLFDAIRDLTLQSPTPLFWSHAQVIVFSERLARKGLLEAI
CCCCCCCCEEEEECEECCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHH
DFLERDPEIKQSTWVLIAQGDLNDVMQTREMAFQPPTKIMADVIKTRNRNAKYAVTSLGD
HHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEHHHHHH
FLRTMDNPDTQPFTAGVNFFKGPMKDMNKLTSRVQEAPREYEIKISDTAVFHEDKMVGWF
HHHHCCCCCCCCEECCCHHHCCHHHHHHHHHHHHHHCCCCEEEEEECEEEEECCCEEEEE
NTKESRGLLFIKGEIKSGVLVLEKEKQRLSVEMFGSSSKLKPVVQDGQLVMKVEIKVTGS
CCCCCCCEEEEEECCCCCEEEEECCCHHEEEEEECCCCCCCCEECCCEEEEEEEEEECCC
LAEALPGIYELDKKVVKDIEQQMNTVVKEEVMAAITRAQELNTDVLGFGRVVHQHFPKEW
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHH
DKELAQSWPELFKDLEVEVTVDGKIKTTGLITTSVNPRKKNK
HHHHHHHHHHHHHCCEEEEEECCEEEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8012571; 9384377 [H]