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The map label for this gene is yqxC [H]

Identifier: 126696992

GI number: 126696992

Start: 1382500

End: 1383312

Strand: Reverse

Name: yqxC [H]

Synonym: P9301_16541

Alternate gene names: 126696992

Gene position: 1383312-1382500 (Counterclockwise)

Preceding gene: 126696995

Following gene: 126696989

Centisome position: 84.25

GC content: 31.98

Gene sequence:

>813_bases
ATGATTAAAAAAAGTAGATTAGACCTTTATCTTCTAAAAAGTGGTTTATGTGAAACTCGTCAAAAAGCCCAAGGTTTAAT
TCTTGCGGGCAAGGTTAGAGATATTAATGGAAAAGTATGGGATAAACCTGGACAACAAGTATTAATTGGGTCTGAATTTT
TTATTGATTCCGAACCTATGTTTGTTTCAAGGGGCGGCGAAAAATTATTGGAGGCATTTAAAAAACTTGAAATTAAAGTA
AAAGATAAAATATGTATTGACGCAGGAATCTCTACCGGAGGATTTACTGATTGCTTATTGCAACAAGGAGCAAAGTTAGT
TTATGGGATAGATGTTGGTTATGGACAGACTGCATGGAAGATTAGAAATAACCCCAAAGTTATACTTTTTGAACGAACTA
ATATTCGAAATTTAAAACCTAACGATCTTTTATCTAGAAGTAATGAATTACCAAATTTTGTAGTTGCTGATTTGTCTTTT
ATTTCATTAAAGTTAGTTTTTAAATCTCTAAGTAATTTATTAGAAGGTGATTGTATTGAGGGAATATTTTTAATTAAACC
CCAATTTGAGGTAGGTAAAGATAAGGTCAGTAAAGGAGGCGTTGTTCGCAATCCCAAATTCCATACTGAAGCAATAGAGT
CTGTTATTTGTGCTGCTAATAATTTCCATTGGAATATAAAGAATTTGATAGCTTCTCCCCTAGTAGGTCCTGCTGGAAAT
CATGAATATTTAGCTTGGATGAGCTTAAGAAGCGAATCAAATCCAATGATTAATAGAGAATATATACAAAATTTAGTTAA
TGAAACTCTCTGA

Upstream 100 bases:

>100_bases
TGTAATTTTTTAGTTCTTATTTAAAATTGGAAGGTATTAAAGAATTTGGATCTTAATCTTGTAGAAGTTCATTATTCAGT
CTTTTTTTATTGATTAATAG

Downstream 100 bases:

>100_bases
ATTAGAGAGCTTCTTCATCTTTATCGCCAGTTCTAATTCTTACAACAGAATCAATTGATGTGATGAATATTTTTCCGTCA
CCTATCTCTCCAGTTTTTGC

Product: rRNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MIKKSRLDLYLLKSGLCETRQKAQGLILAGKVRDINGKVWDKPGQQVLIGSEFFIDSEPMFVSRGGEKLLEAFKKLEIKV
KDKICIDAGISTGGFTDCLLQQGAKLVYGIDVGYGQTAWKIRNNPKVILFERTNIRNLKPNDLLSRSNELPNFVVADLSF
ISLKLVFKSLSNLLEGDCIEGIFLIKPQFEVGKDKVSKGGVVRNPKFHTEAIESVICAANNFHWNIKNLIASPLVGPAGN
HEYLAWMSLRSESNPMINREYIQNLVNETL

Sequences:

>Translated_270_residues
MIKKSRLDLYLLKSGLCETRQKAQGLILAGKVRDINGKVWDKPGQQVLIGSEFFIDSEPMFVSRGGEKLLEAFKKLEIKV
KDKICIDAGISTGGFTDCLLQQGAKLVYGIDVGYGQTAWKIRNNPKVILFERTNIRNLKPNDLLSRSNELPNFVVADLSF
ISLKLVFKSLSNLLEGDCIEGIFLIKPQFEVGKDKVSKGGVVRNPKFHTEAIESVICAANNFHWNIKNLIASPLVGPAGN
HEYLAWMSLRSESNPMINREYIQNLVNETL
>Mature_270_residues
MIKKSRLDLYLLKSGLCETRQKAQGLILAGKVRDINGKVWDKPGQQVLIGSEFFIDSEPMFVSRGGEKLLEAFKKLEIKV
KDKICIDAGISTGGFTDCLLQQGAKLVYGIDVGYGQTAWKIRNNPKVILFERTNIRNLKPNDLLSRSNELPNFVVADLSF
ISLKLVFKSLSNLLEGDCIEGIFLIKPQFEVGKDKVSKGGVVRNPKFHTEAIESVICAANNFHWNIKNLIASPLVGPAGN
HEYLAWMSLRSESNPMINREYIQNLVNETL

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 30198; Mature: 30198

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKSRLDLYLLKSGLCETRQKAQGLILAGKVRDINGKVWDKPGQQVLIGSEFFIDSEPM
CCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCCCEEEECCEEEECCCCE
FVSRGGEKLLEAFKKLEIKVKDKICIDAGISTGGFTDCLLQQGAKLVYGIDVGYGQTAWK
EEECCCHHHHHHHHHCEEEECCEEEEECCCCCCCHHHHHHHCCCEEEEEEECCCCCEEEE
IRNNPKVILFERTNIRNLKPNDLLSRSNELPNFVVADLSFISLKLVFKSLSNLLEGDCIE
ECCCCEEEEEECCCCCCCCCHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCC
GIFLIKPQFEVGKDKVSKGGVVRNPKFHTEAIESVICAANNFHWNIKNLIASPLVGPAGN
CEEEECCCHHCCCHHHCCCCEECCCCHHHHHHHHHHHHCCCCEEEHHHHHHCCCCCCCCC
HEYLAWMSLRSESNPMINREYIQNLVNETL
CCEEEEEEECCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MIKKSRLDLYLLKSGLCETRQKAQGLILAGKVRDINGKVWDKPGQQVLIGSEFFIDSEPM
CCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCCCEEEECCEEEECCCCE
FVSRGGEKLLEAFKKLEIKVKDKICIDAGISTGGFTDCLLQQGAKLVYGIDVGYGQTAWK
EEECCCHHHHHHHHHCEEEECCEEEEECCCCCCCHHHHHHHCCCEEEEEEECCCCCEEEE
IRNNPKVILFERTNIRNLKPNDLLSRSNELPNFVVADLSFISLKLVFKSLSNLLEGDCIE
ECCCCEEEEEECCCCCCCCCHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCC
GIFLIKPQFEVGKDKVSKGGVVRNPKFHTEAIESVICAANNFHWNIKNLIASPLVGPAGN
CEEEECCCHHCCCHHHCCCCEECCCCHHHHHHHHHHHHCCCCEEEHHHHHHCCCCCCCCC
HEYLAWMSLRSESNPMINREYIQNLVNETL
CCEEEEEEECCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]