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The map label for this gene is secD [H]

Identifier: 126696267

GI number: 126696267

Start: 799139

End: 800602

Strand: Direct

Name: secD [H]

Synonym: P9301_09291

Alternate gene names: 126696267

Gene position: 799139-800602 (Clockwise)

Preceding gene: 126696266

Following gene: 126696268

Centisome position: 48.67

GC content: 30.87

Gene sequence:

>1464_bases
ATGAAAAAAAGGCAAGGCTGGCTTTTTTTTATTATATTTCTACTTACTTTATCTGTTTATCTATTAATAAATTATCCTTT
ACAGTTGGGATTGGATCTACAAGGGGGTTCTCAACTTACACTACAAATTATTAAAGATGAAGGTAAGGTAACAACGGATG
AACTTGAGGCAGTTAATTCGGTTATAGATAAGCGCGTTAACAATTTAGGAGTTTCTGAGTCTAATTTGCAGACCCTCGGT
GGAGATCAATTGATTTTAGAATTGCCAGGTGAACAAAATCCATTAGTTGCTTCAAGAGTATTAGGTAAGACTGCTTTATT
AGAATTTAGAACTCAAAAAGAAGGAACATCTACAGATTTAAAAATCCTGCAAGTACAGAGATTGAGTATTAAAGATTTAA
TGGAACAATATTCCTTTGCAAAAAATAGTCAAAATGAGGATAATTTCTTAAATGTTATTAAAGATGATCTTAAAAAGATA
GAGCAAGAATTGAATTACTCATCTACTAGTAATGATTTATATGGGAAGTTAATTGAAATCAAAAAATATGTTGATAACGA
AATTACAAATTTATTTATTAAAACAGATTTATCAGGTAAGGATCTTATTAACGTAGGAAGGAGACAAGAACAAACAAATA
GTAATTGGGAGGTTTTATTAACTTTTAGTAATTCAGGAGGTGAAAAGTTTGCAGAAATTACAAAGTCAATTGCTGGTACT
AATCAACTATTAGCTATCATTCTAGATGGTGAATCAATAAGTGAAGCCAGTGTTGGTATGCAGTTTGCTAGTACTGGGAT
TACAGGTGGATCAGCAACAATAAGCGGTAATTTTAGTGCTGAAAATGCTAGAGAATTAGAAGTTCAACTTAAAGGAGGCT
CATTGCCATTGCCAATTGAAATAGTAGAAACTAACACAATAGGGGCTCTGTTGGGATCCAAAAATATTTTAAAAAGTCTT
TATGCAGCTATTAGTGGGTTAATTTTTGTTGGTATTTTTATGATTTTTAATTATAGAATTCTAGGTTTTGTTTCAGTTCT
TTCTCTAGTACTTTATGGTTTCTTTAATTTAGCCATATATTCTCTAATTCCTGTAACTTTGACCTTGCCGGGAATATCTG
GGCTTATACTAAGTATTGGTATGGCTGTTGATGCAAATATTCTAATATTTGAGAGGATTAGAGAAGAATTATATGAAGGC
AATACTCTAACAAGATCTATTGATAGCGGTTTTCAGAGAGCTAATTCATCCATAGTTGATGGCCATATTACAACTCTTCT
TAGTTGTTTTGTATTGTTTTTATTAGGAACAAATTTTGTTAAGGGTTTTGCAGCAACATTAGGTATTGGAGTCTTAATTA
GCTTGTTTACCTCATTAAATTGTTCTAAGACTATTTTGCGATTTTTTACAACATATCAATCTTTAAGGCAAAAAAATCTC
TATCTACCCAAGAATAATTTTTAA

Upstream 100 bases:

>100_bases
TCCGACTCCGTATAATGGAAATCTTGAGAATTTGACAATAATCCAACCACATCAAATAGTTGAAAAAGTTGAAGATTTAA
TTAGTGGGAGTATATAAGCA

Downstream 100 bases:

>100_bases
AATTAATTTTTTTGTTTCTAATTTCCTATGAAATACAATCTTCAACTAATAAAGAATAAAAGAAAGATAATTAGTTTTTC
AACTTTTCTTATTTTGTTAA

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 487; Mature: 487

Protein sequence:

>487_residues
MKKRQGWLFFIIFLLTLSVYLLINYPLQLGLDLQGGSQLTLQIIKDEGKVTTDELEAVNSVIDKRVNNLGVSESNLQTLG
GDQLILELPGEQNPLVASRVLGKTALLEFRTQKEGTSTDLKILQVQRLSIKDLMEQYSFAKNSQNEDNFLNVIKDDLKKI
EQELNYSSTSNDLYGKLIEIKKYVDNEITNLFIKTDLSGKDLINVGRRQEQTNSNWEVLLTFSNSGGEKFAEITKSIAGT
NQLLAIILDGESISEASVGMQFASTGITGGSATISGNFSAENARELEVQLKGGSLPLPIEIVETNTIGALLGSKNILKSL
YAAISGLIFVGIFMIFNYRILGFVSVLSLVLYGFFNLAIYSLIPVTLTLPGISGLILSIGMAVDANILIFERIREELYEG
NTLTRSIDSGFQRANSSIVDGHITTLLSCFVLFLLGTNFVKGFAATLGIGVLISLFTSLNCSKTILRFFTTYQSLRQKNL
YLPKNNF

Sequences:

>Translated_487_residues
MKKRQGWLFFIIFLLTLSVYLLINYPLQLGLDLQGGSQLTLQIIKDEGKVTTDELEAVNSVIDKRVNNLGVSESNLQTLG
GDQLILELPGEQNPLVASRVLGKTALLEFRTQKEGTSTDLKILQVQRLSIKDLMEQYSFAKNSQNEDNFLNVIKDDLKKI
EQELNYSSTSNDLYGKLIEIKKYVDNEITNLFIKTDLSGKDLINVGRRQEQTNSNWEVLLTFSNSGGEKFAEITKSIAGT
NQLLAIILDGESISEASVGMQFASTGITGGSATISGNFSAENARELEVQLKGGSLPLPIEIVETNTIGALLGSKNILKSL
YAAISGLIFVGIFMIFNYRILGFVSVLSLVLYGFFNLAIYSLIPVTLTLPGISGLILSIGMAVDANILIFERIREELYEG
NTLTRSIDSGFQRANSSIVDGHITTLLSCFVLFLLGTNFVKGFAATLGIGVLISLFTSLNCSKTILRFFTTYQSLRQKNL
YLPKNNF
>Mature_487_residues
MKKRQGWLFFIIFLLTLSVYLLINYPLQLGLDLQGGSQLTLQIIKDEGKVTTDELEAVNSVIDKRVNNLGVSESNLQTLG
GDQLILELPGEQNPLVASRVLGKTALLEFRTQKEGTSTDLKILQVQRLSIKDLMEQYSFAKNSQNEDNFLNVIKDDLKKI
EQELNYSSTSNDLYGKLIEIKKYVDNEITNLFIKTDLSGKDLINVGRRQEQTNSNWEVLLTFSNSGGEKFAEITKSIAGT
NQLLAIILDGESISEASVGMQFASTGITGGSATISGNFSAENARELEVQLKGGSLPLPIEIVETNTIGALLGSKNILKSL
YAAISGLIFVGIFMIFNYRILGFVSVLSLVLYGFFNLAIYSLIPVTLTLPGISGLILSIGMAVDANILIFERIREELYEG
NTLTRSIDSGFQRANSSIVDGHITTLLSCFVLFLLGTNFVKGFAATLGIGVLISLFTSLNCSKTILRFFTTYQSLRQKNL
YLPKNNF

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=482, Percent_Identity=29.8755186721992, Blast_Score=186, Evalue=2e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 53649; Mature: 53649

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRQGWLFFIIFLLTLSVYLLINYPLQLGLDLQGGSQLTLQIIKDEGKVTTDELEAVNS
CCCCCHHHHHHHHHHHHHHHHHHCCCHHCCEEECCCCEEEEEEEECCCCCCHHHHHHHHH
VIDKRVNNLGVSESNLQTLGGDQLILELPGEQNPLVASRVLGKTALLEFRTQKEGTSTDL
HHHHHHHHCCCCCCCHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
KILQVQRLSIKDLMEQYSFAKNSQNEDNFLNVIKDDLKKIEQELNYSSTSNDLYGKLIEI
EEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
KKYVDNEITNLFIKTDLSGKDLINVGRRQEQTNSNWEVLLTFSNSGGEKFAEITKSIAGT
HHHHCHHHHEEEEEECCCCHHHHHHCCHHHCCCCCCEEEEEEECCCCHHHHHHHHHHCCC
NQLLAIILDGESISEASVGMQFASTGITGGSATISGNFSAENARELEVQLKGGSLPLPIE
CEEEEEEECCCCCCHHHHCHHHHHCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCEE
IVETNTIGALLGSKNILKSLYAAISGLIFVGIFMIFNYRILGFVSVLSLVLYGFFNLAIY
EEECCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLIPVTLTLPGISGLILSIGMAVDANILIFERIREELYEGNTLTRSIDSGFQRANSSIVD
HHHHHHEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
GHITTLLSCFVLFLLGTNFVKGFAATLGIGVLISLFTSLNCSKTILRFFTTYQSLRQKNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
YLPKNNF
CCCCCCC
>Mature Secondary Structure
MKKRQGWLFFIIFLLTLSVYLLINYPLQLGLDLQGGSQLTLQIIKDEGKVTTDELEAVNS
CCCCCHHHHHHHHHHHHHHHHHHCCCHHCCEEECCCCEEEEEEEECCCCCCHHHHHHHHH
VIDKRVNNLGVSESNLQTLGGDQLILELPGEQNPLVASRVLGKTALLEFRTQKEGTSTDL
HHHHHHHHCCCCCCCHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
KILQVQRLSIKDLMEQYSFAKNSQNEDNFLNVIKDDLKKIEQELNYSSTSNDLYGKLIEI
EEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
KKYVDNEITNLFIKTDLSGKDLINVGRRQEQTNSNWEVLLTFSNSGGEKFAEITKSIAGT
HHHHCHHHHEEEEEECCCCHHHHHHCCHHHCCCCCCEEEEEEECCCCHHHHHHHHHHCCC
NQLLAIILDGESISEASVGMQFASTGITGGSATISGNFSAENARELEVQLKGGSLPLPIE
CEEEEEEECCCCCCHHHHCHHHHHCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCEE
IVETNTIGALLGSKNILKSLYAAISGLIFVGIFMIFNYRILGFVSVLSLVLYGFFNLAIY
EEECCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLIPVTLTLPGISGLILSIGMAVDANILIFERIREELYEGNTLTRSIDSGFQRANSSIVD
HHHHHHEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
GHITTLLSCFVLFLLGTNFVKGFAATLGIGVLISLFTSLNCSKTILRFFTTYQSLRQKNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
YLPKNNF
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]