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The map label for this gene is 126695642

Identifier: 126695642

GI number: 126695642

Start: 279199

End: 280683

Strand: Reverse

Name: 126695642

Synonym: P9301_03041

Alternate gene names: NA

Gene position: 280683-279199 (Counterclockwise)

Preceding gene: 126695643

Following gene: 126695639

Centisome position: 17.1

GC content: 33.2

Gene sequence:

>1485_bases
GTGACTAATTTACAAGATAAAAAAATTGATAAATTTAAAAGTTTTAACAAAGAAGATTGGTCAAGTGCATATCAAAATGT
AGAAAAGGAGCTAACCAAGGAGCCTCTAAAAATTAGCAAAGGTAATAATATTAAAAATTTAAATGGAACATTATTAAGAA
ATGGACCAGGAATATTAGAGAGAGGTGGGCAATGGGTTCATCATCCATTTGATGGTGATGGAATGATAACATCCATAAAA
TTCGAAAATGGTCAGCCATTCTTAACAAATAGATTTGTTAAAACTCAAGGCTATTTAGAAGAAGAAAAAATAAATAAATT
TATTTATAGAGGTGTTTTTGGGACTCAAAAAAATGGAGGAATTTTAAATAATGCATTAGATCTAAAATTCAAGAATATCG
CCAATACTCATGTTGTTAAATTAGGAGATGAAATTCTCGCATTATGGGAAGCAGCCGGTCCACATGCAATGGATCCTGAT
AGTCTTGACACTATTGGTTTAACAACATTAAAAGGAGTACTCAAGCCTAACGAAGCCTTTAGTGCACATCCCAAAACAGA
CCTAAACTCAAATACATCTTCAGAACTTTTAGTCACTTTTGGGGTACAAACCGGGCCAAAAAGTACCATTAGATTAATGG
AATTTGATAATGCTGGTACAAATTCTGGAAAGCTCATCTTTGACAGAAAAGATACCTTTAATGGCTTTGCATTCCTTCAT
GATTTCGCAATCACAACTAATTGGGCAATATTTTTACAGAATGCTATTGATTTCAATCCTCTTCCATTTGTAATGGGTCA
AAGAGGAGCAGCACAATGTCTAAAGTCAAACCCAAATAAAAAGGCAAAGTTTTTTTTCATCCCCAGAGAAAGTGGATTAT
TTAGAGGACAGCCTCCTTTAACAATAGATGCTCCAGAAGGATTCGTTTTTCATCATGTAAACGCATTTGAAAAAGATTCT
AAAATCGTATTAGATAGTATTTTTTATGATGATTTCCCATCAGTTGGTCCAGACGAGAATTTTAGGGATATTGACTTTGA
TAAATATCCAGAAGGAAAACTGAAAAGATCAATTATCGATCTAAAGACAAAAACTTGTGAACTTGAAACTTTCAGTGAAC
AATGTTGTGAATTTGCTGTTGTTAATCCTAAAAACTTAGGATTAAAAGCAACTTTTAGTTGGATGGCAAGCACATCTCAA
AAGCTGGGGAACGCTCCACTTCAAGCAATAAAAAAAATAAATTTAACTTCTAAAGAAGAGATTTCTTGGTCAGCAGGTCC
AAGTGGATTTGTAAGTGAACCAATTATGGTTCCATCAGAAAACTCTTCAAAAGAAGATGAGGGATTTTTATTTATACTTC
TATGGAACGGAGAAAGAAGAGGAAGCGATTTAGTGATATTAGACGCAAAAGACTTAAAAGAATTAGCTGTTTATGAATTA
CCCATTTCAATTCCTCATGGACTTCATGGATCTTGGGTTAATTGA

Upstream 100 bases:

>100_bases
AGCAGCAAAGGAATGCTAGAAAATCAATAAATAGAAATTTTTCGAATCAGCCACAATTCAGTTGATTTTTGGCGAAGATA
GATAGAGCTCTTAATTTGTT

Downstream 100 bases:

>100_bases
ATTTAAGAAAAAATTTCAATTAAATCTGGAATAATTTTTTTTAATGCTTTACCTCTATGACTACAAGAGTCTTTAATATC
ATTATTCATTTCTGCGAAAG

Product: retinal pigment epithelial membrane protein

Products: NA

Alternate protein names: ACO; 8'-apo-beta-carotenal 15,15'-oxygenase; Diox1 [H]

Number of amino acids: Translated: 494; Mature: 493

Protein sequence:

>494_residues
MTNLQDKKIDKFKSFNKEDWSSAYQNVEKELTKEPLKISKGNNIKNLNGTLLRNGPGILERGGQWVHHPFDGDGMITSIK
FENGQPFLTNRFVKTQGYLEEEKINKFIYRGVFGTQKNGGILNNALDLKFKNIANTHVVKLGDEILALWEAAGPHAMDPD
SLDTIGLTTLKGVLKPNEAFSAHPKTDLNSNTSSELLVTFGVQTGPKSTIRLMEFDNAGTNSGKLIFDRKDTFNGFAFLH
DFAITTNWAIFLQNAIDFNPLPFVMGQRGAAQCLKSNPNKKAKFFFIPRESGLFRGQPPLTIDAPEGFVFHHVNAFEKDS
KIVLDSIFYDDFPSVGPDENFRDIDFDKYPEGKLKRSIIDLKTKTCELETFSEQCCEFAVVNPKNLGLKATFSWMASTSQ
KLGNAPLQAIKKINLTSKEEISWSAGPSGFVSEPIMVPSENSSKEDEGFLFILLWNGERRGSDLVILDAKDLKELAVYEL
PISIPHGLHGSWVN

Sequences:

>Translated_494_residues
MTNLQDKKIDKFKSFNKEDWSSAYQNVEKELTKEPLKISKGNNIKNLNGTLLRNGPGILERGGQWVHHPFDGDGMITSIK
FENGQPFLTNRFVKTQGYLEEEKINKFIYRGVFGTQKNGGILNNALDLKFKNIANTHVVKLGDEILALWEAAGPHAMDPD
SLDTIGLTTLKGVLKPNEAFSAHPKTDLNSNTSSELLVTFGVQTGPKSTIRLMEFDNAGTNSGKLIFDRKDTFNGFAFLH
DFAITTNWAIFLQNAIDFNPLPFVMGQRGAAQCLKSNPNKKAKFFFIPRESGLFRGQPPLTIDAPEGFVFHHVNAFEKDS
KIVLDSIFYDDFPSVGPDENFRDIDFDKYPEGKLKRSIIDLKTKTCELETFSEQCCEFAVVNPKNLGLKATFSWMASTSQ
KLGNAPLQAIKKINLTSKEEISWSAGPSGFVSEPIMVPSENSSKEDEGFLFILLWNGERRGSDLVILDAKDLKELAVYEL
PISIPHGLHGSWVN
>Mature_493_residues
TNLQDKKIDKFKSFNKEDWSSAYQNVEKELTKEPLKISKGNNIKNLNGTLLRNGPGILERGGQWVHHPFDGDGMITSIKF
ENGQPFLTNRFVKTQGYLEEEKINKFIYRGVFGTQKNGGILNNALDLKFKNIANTHVVKLGDEILALWEAAGPHAMDPDS
LDTIGLTTLKGVLKPNEAFSAHPKTDLNSNTSSELLVTFGVQTGPKSTIRLMEFDNAGTNSGKLIFDRKDTFNGFAFLHD
FAITTNWAIFLQNAIDFNPLPFVMGQRGAAQCLKSNPNKKAKFFFIPRESGLFRGQPPLTIDAPEGFVFHHVNAFEKDSK
IVLDSIFYDDFPSVGPDENFRDIDFDKYPEGKLKRSIIDLKTKTCELETFSEQCCEFAVVNPKNLGLKATFSWMASTSQK
LGNAPLQAIKKINLTSKEEISWSAGPSGFVSEPIMVPSENSSKEDEGFLFILLWNGERRGSDLVILDAKDLKELAVYELP
ISIPHGLHGSWVN

Specific function: Cleaves a number of carotenals and carotenols in the all-trans configuration at the 15-15' double bond producing retinal or retinol, respectively. Also shows activity toward lycopenals and the corresponding alcohols. Does not cleave beta- carotene or lyco

COG id: COG3670

COG function: function code Q; Lignostilbene-alpha,beta-dioxygenase and related enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid oxygenase family [H]

Homologues:

Organism=Homo sapiens, GI4506591, Length=502, Percent_Identity=23.3067729083665, Blast_Score=100, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI32564756, Length=541, Percent_Identity=24.2144177449168, Blast_Score=113, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI71998242, Length=519, Percent_Identity=22.9287090558767, Blast_Score=112, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004294 [H]

Pfam domain/function: PF03055 RPE65 [H]

EC number: =1.14.99.41 [H]

Molecular weight: Translated: 55198; Mature: 55067

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNLQDKKIDKFKSFNKEDWSSAYQNVEKELTKEPLKISKGNNIKNLNGTLLRNGPGILE
CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCEEEECCCCHHH
RGGQWVHHPFDGDGMITSIKFENGQPFLTNRFVKTQGYLEEEKINKFIYRGVFGTQKNGG
CCCCEEECCCCCCCEEEEEEECCCCCCHHHEEECCCCCCCHHHHHHHHHHCCCCCCCCCC
ILNNALDLKFKNIANTHVVKLGDEILALWEAAGPHAMDPDSLDTIGLTTLKGVLKPNEAF
EECCEEEEEECCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
SAHPKTDLNSNTSSELLVTFGVQTGPKSTIRLMEFDNAGTNSGKLIFDRKDTFNGFAFLH
CCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCEEEEE
DFAITTNWAIFLQNAIDFNPLPFVMGQRGAAQCLKSNPNKKAKFFFIPRESGLFRGQPPL
EHHHHCCEEEEEECCCCCCCCCHHHCCCHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCE
TIDAPEGFVFHHVNAFEKDSKIVLDSIFYDDFPSVGPDENFRDIDFDKYPEGKLKRSIID
EEECCCCEEEEECCCCCCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
LKTKTCELETFSEQCCEFAVVNPKNLGLKATFSWMASTSQKLGNAPLQAIKKINLTSKEE
HCCCEEEHHHHHHHCCEEEEECCCCCCEEEEHHHHHHHHHHHCCCHHHHHHHCCCCCCCC
ISWSAGPSGFVSEPIMVPSENSSKEDEGFLFILLWNGERRGSDLVILDAKDLKELAVYEL
CCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEEEECCCCCCCCEEEECHHHHHHHEEEEE
PISIPHGLHGSWVN
CCCCCCCCCCCCCC
>Mature Secondary Structure 
TNLQDKKIDKFKSFNKEDWSSAYQNVEKELTKEPLKISKGNNIKNLNGTLLRNGPGILE
CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCEEEECCCCHHH
RGGQWVHHPFDGDGMITSIKFENGQPFLTNRFVKTQGYLEEEKINKFIYRGVFGTQKNGG
CCCCEEECCCCCCCEEEEEEECCCCCCHHHEEECCCCCCCHHHHHHHHHHCCCCCCCCCC
ILNNALDLKFKNIANTHVVKLGDEILALWEAAGPHAMDPDSLDTIGLTTLKGVLKPNEAF
EECCEEEEEECCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
SAHPKTDLNSNTSSELLVTFGVQTGPKSTIRLMEFDNAGTNSGKLIFDRKDTFNGFAFLH
CCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCEEEEE
DFAITTNWAIFLQNAIDFNPLPFVMGQRGAAQCLKSNPNKKAKFFFIPRESGLFRGQPPL
EHHHHCCEEEEEECCCCCCCCCHHHCCCHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCE
TIDAPEGFVFHHVNAFEKDSKIVLDSIFYDDFPSVGPDENFRDIDFDKYPEGKLKRSIID
EEECCCCEEEEECCCCCCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
LKTKTCELETFSEQCCEFAVVNPKNLGLKATFSWMASTSQKLGNAPLQAIKKINLTSKEE
HCCCEEEHHHHHHHCCEEEEECCCCCCEEEEHHHHHHHHHHHCCCHHHHHHHCCCCCCCC
ISWSAGPSGFVSEPIMVPSENSSKEDEGFLFILLWNGERRGSDLVILDAKDLKELAVYEL
CCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEEEECCCCCCCCEEEECHHHHHHHEEEEE
PISIPHGLHGSWVN
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]