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The map label for this gene is rbgA [H]

Identifier: 126695552

GI number: 126695552

Start: 198619

End: 199491

Strand: Reverse

Name: rbgA [H]

Synonym: P9301_02141

Alternate gene names: 126695552

Gene position: 199491-198619 (Counterclockwise)

Preceding gene: 126695554

Following gene: 126695551

Centisome position: 12.15

GC content: 35.51

Gene sequence:

>873_bases
GTGGACATACCCAAAATTCAATGGTACCCAGGCCATATCGCAAAAGCAGAAAAGAAATTATCTGAAGTTATCAATAAAGT
AGATTTAGTCATAGAAGTTAGAGATGCACGAATTCCTTTGTCAACAGGACATCCACACTTAAATAAATGGATAAATAATA
AAAAACACATTCTTGTTATTAACAGATCAGACATGGTCTCCCCTCATACAATCAATAGCTGGAATAAATGGTTTAATGCT
AAAGATCAATATCCTCTTTGGTGTGATGCTAAAAGGGGAATAGGGATCAAAGAAATTTGTAAGTCAGCCAAAGATTCTAG
GTCGTCAATTGACGATAGAAGACTCTCTAGAGGAATGCGAATTAGGCCAATTAGAGCCCTTACACTTGGTTTCCCAAACG
TAGGAAAGTCAGCATTAATCAATAGAATTGCAAAAAAAAGAGTTGTAGATAGCGCTAGGAAAGCAGGCGTGACTCGTAAT
TTAAGATGGATAAAATTAGAAAGTGGTATAGATCTGCTAGATGCTCCTGGTGTTATACCTCCAAATTTAGAAGATCAAAA
ATCAGCACTTAATCTTGCACTGTGTGATGATATTGGTGAAGCTGCTTATGAAATAGAGAGTGTCGCAATTGAATTTATCA
AAATTATATCCACTCTCAACAAAGATAAGAATGCAAATATCTCAGCTAAACAAATATCAAATAGATATGGAGTTGATATT
ACCAAAGGCTTTAAGAGTCCTTCTGCCTGGATCAACGAAGCAGCTTCCAAACATACCTCAGGTGATACAAGGAGAATGTC
TCATAAGTTATTAGAAGATTATAGAAATCAAATGCTGGGTAAAATTGCTTTAGAAGTCCCACTATGGAATTAA

Upstream 100 bases:

>100_bases
AAATTTTTTAGTTATTAAATTTATACTAAAATTTAGAAGTAAATACTTTTGAAACTTATAAAAACTAAAAGGAATACAAA
ATTTTATTTGATTTATTGAA

Downstream 100 bases:

>100_bases
ATAATCAAAATTCTTTCGGCATTGGAGAAGGTGAGCTTATAGAAATTATTTATGAGCTACCTCTGCCTATGAGGCTAGAC
AGATGGTTGGTAAGTAAAAG

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MDIPKIQWYPGHIAKAEKKLSEVINKVDLVIEVRDARIPLSTGHPHLNKWINNKKHILVINRSDMVSPHTINSWNKWFNA
KDQYPLWCDAKRGIGIKEICKSAKDSRSSIDDRRLSRGMRIRPIRALTLGFPNVGKSALINRIAKKRVVDSARKAGVTRN
LRWIKLESGIDLLDAPGVIPPNLEDQKSALNLALCDDIGEAAYEIESVAIEFIKIISTLNKDKNANISAKQISNRYGVDI
TKGFKSPSAWINEAASKHTSGDTRRMSHKLLEDYRNQMLGKIALEVPLWN

Sequences:

>Translated_290_residues
MDIPKIQWYPGHIAKAEKKLSEVINKVDLVIEVRDARIPLSTGHPHLNKWINNKKHILVINRSDMVSPHTINSWNKWFNA
KDQYPLWCDAKRGIGIKEICKSAKDSRSSIDDRRLSRGMRIRPIRALTLGFPNVGKSALINRIAKKRVVDSARKAGVTRN
LRWIKLESGIDLLDAPGVIPPNLEDQKSALNLALCDDIGEAAYEIESVAIEFIKIISTLNKDKNANISAKQISNRYGVDI
TKGFKSPSAWINEAASKHTSGDTRRMSHKLLEDYRNQMLGKIALEVPLWN
>Mature_290_residues
MDIPKIQWYPGHIAKAEKKLSEVINKVDLVIEVRDARIPLSTGHPHLNKWINNKKHILVINRSDMVSPHTINSWNKWFNA
KDQYPLWCDAKRGIGIKEICKSAKDSRSSIDDRRLSRGMRIRPIRALTLGFPNVGKSALINRIAKKRVVDSARKAGVTRN
LRWIKLESGIDLLDAPGVIPPNLEDQKSALNLALCDDIGEAAYEIESVAIEFIKIISTLNKDKNANISAKQISNRYGVDI
TKGFKSPSAWINEAASKHTSGDTRRMSHKLLEDYRNQMLGKIALEVPLWN

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI296317324, Length=262, Percent_Identity=25.1908396946565, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI9506611, Length=262, Percent_Identity=25.1908396946565, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI45643129, Length=192, Percent_Identity=28.125, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI45643127, Length=192, Percent_Identity=28.125, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI45593130, Length=192, Percent_Identity=28.125, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI7019419, Length=185, Percent_Identity=30.2702702702703, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193211047, Length=222, Percent_Identity=30.1801801801802, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17534827, Length=196, Percent_Identity=25.5102040816327, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6324381, Length=173, Percent_Identity=29.4797687861272, Blast_Score=69, Evalue=8e-13,
Organism=Saccharomyces cerevisiae, GI6320842, Length=187, Percent_Identity=27.2727272727273, Blast_Score=68, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6323744, Length=218, Percent_Identity=27.0642201834862, Blast_Score=68, Evalue=2e-12,
Organism=Drosophila melanogaster, GI85815858, Length=207, Percent_Identity=28.5024154589372, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI28572990, Length=183, Percent_Identity=29.5081967213115, Blast_Score=79, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 32756; Mature: 32756

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIPKIQWYPGHIAKAEKKLSEVINKVDLVIEVRDARIPLSTGHPHLNKWINNKKHILVI
CCCCCCEECCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHCCCCEEEEE
NRSDMVSPHTINSWNKWFNAKDQYPLWCDAKRGIGIKEICKSAKDSRSSIDDRRLSRGMR
CCCCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCE
IRPIRALTLGFPNVGKSALINRIAKKRVVDSARKAGVTRNLRWIKLESGIDLLDAPGVIP
ECEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEECCCCCCC
PNLEDQKSALNLALCDDIGEAAYEIESVAIEFIKIISTLNKDKNANISAKQISNRYGVDI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCH
TKGFKSPSAWINEAASKHTSGDTRRMSHKLLEDYRNQMLGKIALEVPLWN
HCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCC
>Mature Secondary Structure
MDIPKIQWYPGHIAKAEKKLSEVINKVDLVIEVRDARIPLSTGHPHLNKWINNKKHILVI
CCCCCCEECCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHCCCCEEEEE
NRSDMVSPHTINSWNKWFNAKDQYPLWCDAKRGIGIKEICKSAKDSRSSIDDRRLSRGMR
CCCCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCE
IRPIRALTLGFPNVGKSALINRIAKKRVVDSARKAGVTRNLRWIKLESGIDLLDAPGVIP
ECEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEECCCCCCC
PNLEDQKSALNLALCDDIGEAAYEIESVAIEFIKIISTLNKDKNANISAKQISNRYGVDI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCH
TKGFKSPSAWINEAASKHTSGDTRRMSHKLLEDYRNQMLGKIALEVPLWN
HCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]