| Definition | Prochlorococcus marinus str. MIT 9301, complete genome. |
|---|---|
| Accession | NC_009091 |
| Length | 1,641,879 |
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The map label for this gene is pds [H]
Identifier: 126695501
GI number: 126695501
Start: 151231
End: 152631
Strand: Reverse
Name: pds [H]
Synonym: P9301_01631
Alternate gene names: 126695501
Gene position: 152631-151231 (Counterclockwise)
Preceding gene: 126695504
Following gene: 126695500
Centisome position: 9.3
GC content: 35.97
Gene sequence:
>1401_bases ATGCGTGTTGTAATTGCTGGTGCTGGTTTAGCGGGTTTATCTTGCGCTAAATACTTGGTCGATAATGGACACATTCCTAT TGTACTTGAAGCCAGAGACGTTTTAGGTGGGAAAGTTGCCGCATGGAAAGACGAAGATGGAGATTGGTATGAAACTGGGT TACATATATTTTTTGGAGCCTACCCAAATATGCTGCAACTTTTTAAGGAATTAGATATTGAAGACAGGCTCCAATGGAAA AGTCATTCAATGATTTTTAATCAGCCATCAGAGCCTGGAACTTACAGTAGATTCGACTTTCCCGATATACCTGCTCCAGT TAACGGTGTATCAGCAATACTAAGCAATAATGATATGCTTTCATGGAATGAAAAGATTCTATTTGGATTAGGTTTAGTCC CTGCAATGTTGAGAGGCCAAAAATACTTAGATAAGTGTGATACAAAATCATGGACAGATTGGCTAAAAGAGCACAATATA CCGGAAAGAGTTAATGATGAAGTATTTATAGCGATGAGTAAAGCTCTTAATTTCATTGGACCGGATGAAATATCATCTAC AGTTTTATTAACAGCATTAAATAGATTTCTACAAGAAAAAAATGGTTCTAAAATGGCATTCCTTGACGGAGCTCCTCCAG AAAGACTATGCCAGCCAATGGTTGATTATATTACCGCTCGTGGTGGTGAAGTTCACATGAATAGTCCATTAAGGGAAATC AATCTTAATGAGGACAGCACTGTTAAAAGTTTTACTATTGCCTCTTTAGATAAAAACGAAAAGAAAGAGCTTACGGCTGA TGCTTATGTAAGTGCAATGCCTGTAGATCTCTTTAAATTAATGATCCCAAAACAATGGAAAGGGTTAGATGCTTTTTCTA AATTAGATGGTTTAAATGGCGTGCCAGTCATTAATATCCATTTATGGTTTGACAAAAAATTAACAGATATTGATCATTTA TTATTCAGCAGATCACCTCTCCTCAGTGTTTATGCAGATATGAGTATCACCTGCAAAGAATATGAAGATCCAAATAGATC AATGCTTGAATTGGTTTTTGCACCAGCAAAAGATTGGATAAATAGGAGTGATCAGGATATTGTTGACGCAACTATGGAGG AACTCAAAAAATTATTCCCAACTCATTTCATGGGAGACGATAAAACAAACTTACGCAAATATAAAGTAGTCAAAACTCCA AGATCTGTTTATAAAGCAGTTCCTGGATGCCAAGAGTTCAGACCTAGTCAAAAATCTCCTATAAAAAACTTCTTTTTAGC AGGTGACTATACTATGCAAAAATATTTAGCATCAATGGAAGGAGCTGTTTTAAGTGGTAAATTATGCGCGGAATCAATCA ATAAGGAGTATTCCAAAACTCCTCAAAATGTTTCTTCATGA
Upstream 100 bases:
>100_bases TTTTTTCCATAATTTTACGAAATAATCAACGAAATAAACTATTATGTTCTAACTTTAATGTAGCTTATTAGTAAGTGTTA ATTTATTTTTTGATTTAATA
Downstream 100 bases:
>100_bases GATTTACATTTCAGTAATTTAAAAATTCATCTAAAACTTTTTGAAAAATTCAATTTCTCAACTAGATCAAGCATACGAGA TATGCCGAAAAGAAACCCAA
Product: phytoene desaturase
Products: NA
Alternate protein names: Phytoene desaturase [H]
Number of amino acids: Translated: 466; Mature: 466
Protein sequence:
>466_residues MRVVIAGAGLAGLSCAKYLVDNGHIPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLFKELDIEDRLQWK SHSMIFNQPSEPGTYSRFDFPDIPAPVNGVSAILSNNDMLSWNEKILFGLGLVPAMLRGQKYLDKCDTKSWTDWLKEHNI PERVNDEVFIAMSKALNFIGPDEISSTVLLTALNRFLQEKNGSKMAFLDGAPPERLCQPMVDYITARGGEVHMNSPLREI NLNEDSTVKSFTIASLDKNEKKELTADAYVSAMPVDLFKLMIPKQWKGLDAFSKLDGLNGVPVINIHLWFDKKLTDIDHL LFSRSPLLSVYADMSITCKEYEDPNRSMLELVFAPAKDWINRSDQDIVDATMEELKKLFPTHFMGDDKTNLRKYKVVKTP RSVYKAVPGCQEFRPSQKSPIKNFFLAGDYTMQKYLASMEGAVLSGKLCAESINKEYSKTPQNVSS
Sequences:
>Translated_466_residues MRVVIAGAGLAGLSCAKYLVDNGHIPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLFKELDIEDRLQWK SHSMIFNQPSEPGTYSRFDFPDIPAPVNGVSAILSNNDMLSWNEKILFGLGLVPAMLRGQKYLDKCDTKSWTDWLKEHNI PERVNDEVFIAMSKALNFIGPDEISSTVLLTALNRFLQEKNGSKMAFLDGAPPERLCQPMVDYITARGGEVHMNSPLREI NLNEDSTVKSFTIASLDKNEKKELTADAYVSAMPVDLFKLMIPKQWKGLDAFSKLDGLNGVPVINIHLWFDKKLTDIDHL LFSRSPLLSVYADMSITCKEYEDPNRSMLELVFAPAKDWINRSDQDIVDATMEELKKLFPTHFMGDDKTNLRKYKVVKTP RSVYKAVPGCQEFRPSQKSPIKNFFLAGDYTMQKYLASMEGAVLSGKLCAESINKEYSKTPQNVSS >Mature_466_residues MRVVIAGAGLAGLSCAKYLVDNGHIPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLFKELDIEDRLQWK SHSMIFNQPSEPGTYSRFDFPDIPAPVNGVSAILSNNDMLSWNEKILFGLGLVPAMLRGQKYLDKCDTKSWTDWLKEHNI PERVNDEVFIAMSKALNFIGPDEISSTVLLTALNRFLQEKNGSKMAFLDGAPPERLCQPMVDYITARGGEVHMNSPLREI NLNEDSTVKSFTIASLDKNEKKELTADAYVSAMPVDLFKLMIPKQWKGLDAFSKLDGLNGVPVINIHLWFDKKLTDIDHL LFSRSPLLSVYADMSITCKEYEDPNRSMLELVFAPAKDWINRSDQDIVDATMEELKKLFPTHFMGDDKTNLRKYKVVKTP RSVYKAVPGCQEFRPSQKSPIKNFFLAGDYTMQKYLASMEGAVLSGKLCAESINKEYSKTPQNVSS
Specific function: This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene [H]
COG id: COG3349
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002937 - InterPro: IPR014102 [H]
Pfam domain/function: PF01593 Amino_oxidase [H]
EC number: 1.3.99.-
Molecular weight: Translated: 52522; Mature: 52522
Theoretical pI: Translated: 5.72; Mature: 5.72
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVVIAGAGLAGLSCAKYLVDNGHIPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGA CEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHCCCCEEEEECCCCCHHHHCEEEEECC YPNMLQLFKELDIEDRLQWKSHSMIFNQPSEPGTYSRFDFPDIPAPVNGVSAILSNNDML CHHHHHHHHHCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEE SWNEKILFGLGLVPAMLRGQKYLDKCDTKSWTDWLKEHNIPERVNDEVFIAMSKALNFIG CCCCHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHCCCCCCCCCCEEEEEHHHHCCCC PDEISSTVLLTALNRFLQEKNGSKMAFLDGAPPERLCQPMVDYITARGGEVHMNSPLREI CHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC NLNEDSTVKSFTIASLDKNEKKELTADAYVSAMPVDLFKLMIPKQWKGLDAFSKLDGLNG CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCC VPVINIHLWFDKKLTDIDHLLFSRSPLLSVYADMSITCKEYEDPNRSMLELVFAPAKDWI CCEEEEEEEECCCHHHHHHHHHCCCCHHHHHCCCEEEEECCCCCCHHHHHHHHHCCHHHC NRSDQDIVDATMEELKKLFPTHFMGDDKTNLRKYKVVKTPRSVYKAVPGCQEFRPSQKSP CCCCHHHHHHHHHHHHHHCCHHCCCCCCCCCEEEEEECCCHHHHHHCCCHHHCCCCCCCC IKNFFLAGDYTMQKYLASMEGAVLSGKLCAESINKEYSKTPQNVSS HHHEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MRVVIAGAGLAGLSCAKYLVDNGHIPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGA CEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHCCCCEEEEECCCCCHHHHCEEEEECC YPNMLQLFKELDIEDRLQWKSHSMIFNQPSEPGTYSRFDFPDIPAPVNGVSAILSNNDML CHHHHHHHHHCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEE SWNEKILFGLGLVPAMLRGQKYLDKCDTKSWTDWLKEHNIPERVNDEVFIAMSKALNFIG CCCCHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHCCCCCCCCCCEEEEEHHHHCCCC PDEISSTVLLTALNRFLQEKNGSKMAFLDGAPPERLCQPMVDYITARGGEVHMNSPLREI CHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC NLNEDSTVKSFTIASLDKNEKKELTADAYVSAMPVDLFKLMIPKQWKGLDAFSKLDGLNG CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCC VPVINIHLWFDKKLTDIDHLLFSRSPLLSVYADMSITCKEYEDPNRSMLELVFAPAKDWI CCEEEEEEEECCCHHHHHHHHHCCCCHHHHHCCCEEEEECCCCCCHHHHHHHHHCCHHHC NRSDQDIVDATMEELKKLFPTHFMGDDKTNLRKYKVVKTPRSVYKAVPGCQEFRPSQKSP CCCCHHHHHHHHHHHHHHCCHHCCCCCCCCCEEEEEECCCHHHHHHCCCHHHCCCCCCCC IKNFFLAGDYTMQKYLASMEGAVLSGKLCAESINKEYSKTPQNVSS HHHEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1907510 [H]