Definition Clostridium difficile 630 chromosome, complete genome.
Accession NC_009089
Length 4,290,252

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The map label for this gene is 126700954

Identifier: 126700954

GI number: 126700954

Start: 3896730

End: 3897200

Strand: Direct

Name: 126700954

Synonym: CD3334

Alternate gene names: NA

Gene position: 3896730-3897200 (Clockwise)

Preceding gene: 126700953

Following gene: 126700967

Centisome position: 90.83

GC content: 28.87

Gene sequence:

>471_bases
ATGATGAATTTTTCTATAAAGGAATTAAATGCATTTGCAGTTATTGGGCAGGAAGTAGAACTGACTAATTATCAAAAAAA
GAATATTCAGATTAGTACACAGTTTTGGAGAAAATTTAACAGTAGTTTGAAGAAATCATATCTTTCACAATCGGGAAATT
GGGTAAAATATGCTTTTATGGAACGAAGAAATGGAAAACTTTATTATTTCTGTTCTATACCAAAGAGAACTATTCTTCCA
GACAACTTTCTGTATAAAGAAATACCGTCATATAAATATTTGGTCGTGGAGCATATTGGTGCTATGGGGAAAATATATGA
AACTTATAGAAAAATTTATCAGGAAATTATTCCTAATACACCATATACCCCTATAAAAAATATTATCCTGCACTTTGAAA
AATATGATTACCGTTTCCATTGGAATAGAGATAATTCAGTTATTGAAATTTGGATACCTATTCAAGATTAG

Upstream 100 bases:

>100_bases
AAATCATAAGAAAAGGGAAAAACTGGTATATAACGATTGATAATTGTATTATAACGGTAAATGCGTACAGTTATACCGTT
ATCACTGCTCACAAAGTAAA

Downstream 100 bases:

>100_bases
AAGCAATTCCATATCCATACACACAAAGCAGTTAGTCTTAGGATTGACTGCTTTTTAAAAAGACACCATTTAGGTGTAAT
GATGTCTTTTGGGTGTTATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MMNFSIKELNAFAVIGQEVELTNYQKKNIQISTQFWRKFNSSLKKSYLSQSGNWVKYAFMERRNGKLYYFCSIPKRTILP
DNFLYKEIPSYKYLVVEHIGAMGKIYETYRKIYQEIIPNTPYTPIKNIILHFEKYDYRFHWNRDNSVIEIWIPIQD

Sequences:

>Translated_156_residues
MMNFSIKELNAFAVIGQEVELTNYQKKNIQISTQFWRKFNSSLKKSYLSQSGNWVKYAFMERRNGKLYYFCSIPKRTILP
DNFLYKEIPSYKYLVVEHIGAMGKIYETYRKIYQEIIPNTPYTPIKNIILHFEKYDYRFHWNRDNSVIEIWIPIQD
>Mature_156_residues
MMNFSIKELNAFAVIGQEVELTNYQKKNIQISTQFWRKFNSSLKKSYLSQSGNWVKYAFMERRNGKLYYFCSIPKRTILP
DNFLYKEIPSYKYLVVEHIGAMGKIYETYRKIYQEIIPNTPYTPIKNIILHFEKYDYRFHWNRDNSVIEIWIPIQD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18935; Mature: 18935

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNFSIKELNAFAVIGQEVELTNYQKKNIQISTQFWRKFNSSLKKSYLSQSGNWVKYAFM
CCCCCHHHCCEEEEECCEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEEE
ERRNGKLYYFCSIPKRTILPDNFLYKEIPSYKYLVVEHIGAMGKIYETYRKIYQEIIPNT
ECCCCCEEEEEECCCCCCCCCCCHHHHCCCCEEHHHHHHCHHHHHHHHHHHHHHHHCCCC
PYTPIKNIILHFEKYDYRFHWNRDNSVIEIWIPIQD
CCCHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECC
>Mature Secondary Structure
MMNFSIKELNAFAVIGQEVELTNYQKKNIQISTQFWRKFNSSLKKSYLSQSGNWVKYAFM
CCCCCHHHCCEEEEECCEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEEE
ERRNGKLYYFCSIPKRTILPDNFLYKEIPSYKYLVVEHIGAMGKIYETYRKIYQEIIPNT
ECCCCCEEEEEECCCCCCCCCCCHHHHCCCCEEHHHHHHCHHHHHHHHHHHHHHHHCCCC
PYTPIKNIILHFEKYDYRFHWNRDNSVIEIWIPIQD
CCCHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA