| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126700765
Identifier: 126700765
GI number: 126700765
Start: 3672294
End: 3674912
Strand: Direct
Name: 126700765
Synonym: CD3148
Alternate gene names: NA
Gene position: 3672294-3674912 (Clockwise)
Preceding gene: 126700763
Following gene: 126700766
Centisome position: 85.6
GC content: 23.6
Gene sequence:
>2619_bases ATGTTAACTACAAATATCCATTATATTCTTGATAATGATATATGTGAAATTTATTTTAATAAACAAAGGCTAACAAATTC TAAGTATTATCAAGATAATATTAATGTATTAAATTATATTATAAATGAAAAAAATAATAACTTAATTATCAATTATAATG ACAAATACATATATGCTATTTATTTGTTGAATATAGCTATAAACTCATACTTAAATAATACATTAAACCCAAATAATCAC ATTCTTACAAAACTCGATAAAGGTATGCCCCTGCTCTACAAGGGTCAAATAGTTATATTTAAAAATATAAATAATACACA CATAACTTTAGGACATAAAAATAAAACGGATACAACACTTATACCTATTGACTCGGCTTATATGCTTATAACCTATAATG GTCATTTAGAAGTCAATTCTATGGGCAAAACTCCAGCATCTAAGACTTTTCAAACAAAGAATGTTCTATCATCTTTAGGT TTTTCAGACTTAAAAAATATGACTGGAGTAATAAATGATTCTACACTGATTATATTGCCTTGTAAAGATGATATATCTGA CTTAGTTAGTAATATTAAAATAAAAGATATTAATAATACTTATAAGTTTACTGAACTATTTCCATGTTCATATATTTCAT CAACTGGTGCCGAAACTGATTATCCTGGAAATCACGCTAAGCAAATACCTTTACTTAAATTTACAACTAATATTTCTAGT GCATTTGAAATTATTAAATCTGATAAGTCTATAAAAAATGTATTTATAATAGGTGATTATCCAATTTATAAGCATATAAA TGATTTTGAAAGAATTTTAAATAGAAAAAGGATAGAAAGTGTAAATATTGTAACCTCAAATTCAAATATAAGCAATATAT TAGATTTACCAAATATAGATAATCTAAATATATACTCTTGGTCTAAAGATGTTCTGTTAACCTATAGCCAAGATTTTGAA AATACCTCTACTTTTCAGAAATTATGGCTAGATAAACTTATAAATAAAAATATATGTACTACTTCTGTTGATTCTAATAT CTCTGACTTGATACATCAGGCTAGAAAATCACTTTATTACATATCTAAGTATGATTTTGATATTTCCATAAAAAACTCAC TTATGATGTGTAGTTACTCTCTTCTTAAAATCTTAGAAAATACACCTTTTAACCTAGATTTTTTAGAAGAAACTATAAAG CTTTTAAATTTAAATATAGCAACTCCTTCAGCGAAGCTAGAAAATATAAAATATTTAATTTCAAGTACTAGCCCAGATTT AGAATTAAGTGCATTATTTGATGATGTTATAGTCAAATTTGAAAGAATTATAAATGAATTATCTGATAATAATACCAAAT TCAATACACTAAATAAATTAGTATCTTCATATAAATACAAAACATTTACACCAAATACACCTGTTATATTGCTACAAAAA CAATATGAAGCTATTATACTTAAAAATTTATTAAAATCTAGAAATATAAATTTACAAGTTATTTCTGCTGAAAAATTTAA AGATTCAAAAACAATAAAAAATCTTATTATGTTTGGATTCTATGATTTGAAATATTTAGATATTTTAAATAGTGATTTGA TTATAAATATTACACTGTATTTATATAATAGTGAATTATCCAAATATAATTACTATATGAATCAAATAAATTCTGCAAGA AATAAAATTGAAAAAAATAATAAAATATATAACTTACTTGATATAAAACCTTTTAAACCAACTTATGAAACCAATAAATT AGAAGCTTATTCTACCGATAGTCCTATTTCTGATGATGATTCTATGGATGAATATATATCTAATTATAAATTTGATATAA ATTTAAATGAAATTATATTATCTCTATCTATAAATCAAGGGATTTACAACTCTAAAAAAGAACATGTTACATCATTCATG ATTTCTGATAATAATGAGTATATATTCTGTACAAAAAAGGCAATAGCCTATTCAATAGATTGGGATAAAAAAAGTGTTAG GAAAAAGAAACTTTCAGAGGCTAAAGTTAATGACTGGTTTTTATTTGTTGATGATTACTTAAATGAAGAGGGTGAATTAG TTATTAATGTTATACAAAAGCTATTAGAACTTAATTTATTGCCATCTCATTATCTTGATGATTATAAATTAACTAATTCA TGGAAATCAGAACTTAAAAACTATATATCTTATAGTAAATATAATTATAATGATGTATCAAACAGTTTAGCTGTTTTAGG TGAAAAGATTAATCCTATAACAATCAAAAACTGGGTAACAAATAAAAGATTAATAGGTCCTATATATTTAAAAACTTTCG AAAAGATATTTAAAGTTATAGATTCTAAATTAGATCATACCGAGGTATATGATGCTACTAAAAGTATACGCTCTTTGCAC ACTAAAATAAAAAAATCTATAGATACATTTGTATCTGATAATTTCTTTAGCAGTAAATCAGATATAATTAAAGATGAAGT GTCTGCAGTTGTTTTAAGTATGCTTGGGAATACAAATGATTATGTTACACCTGTACAAATACGAGAAATACACAGTTGTG ATAAGTATCTGTCACCCCACCTTGTTAACAAAGTTTTAGACTTATATAGTGTTTATTAA
Upstream 100 bases:
>100_bases TTTTTATATTATATACCATATATTATTTTTTAGTAATATAATTATAATATAGAATAAAAACTATTCTAATAAACAATAGT AACTACTAAAGGAGATTTAA
Downstream 100 bases:
>100_bases ATAAATAGGAGGTAAATATGAATTGTAGTGAACTAAGAGATAAAACCCTAGATCTTGTAAGAAAAGAACTTCTTGGACCT GGTTCGGAAGATCTTTGTGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 872; Mature: 872
Protein sequence:
>872_residues MLTTNIHYILDNDICEIYFNKQRLTNSKYYQDNINVLNYIINEKNNNLIINYNDKYIYAIYLLNIAINSYLNNTLNPNNH ILTKLDKGMPLLYKGQIVIFKNINNTHITLGHKNKTDTTLIPIDSAYMLITYNGHLEVNSMGKTPASKTFQTKNVLSSLG FSDLKNMTGVINDSTLIILPCKDDISDLVSNIKIKDINNTYKFTELFPCSYISSTGAETDYPGNHAKQIPLLKFTTNISS AFEIIKSDKSIKNVFIIGDYPIYKHINDFERILNRKRIESVNIVTSNSNISNILDLPNIDNLNIYSWSKDVLLTYSQDFE NTSTFQKLWLDKLINKNICTTSVDSNISDLIHQARKSLYYISKYDFDISIKNSLMMCSYSLLKILENTPFNLDFLEETIK LLNLNIATPSAKLENIKYLISSTSPDLELSALFDDVIVKFERIINELSDNNTKFNTLNKLVSSYKYKTFTPNTPVILLQK QYEAIILKNLLKSRNINLQVISAEKFKDSKTIKNLIMFGFYDLKYLDILNSDLIINITLYLYNSELSKYNYYMNQINSAR NKIEKNNKIYNLLDIKPFKPTYETNKLEAYSTDSPISDDDSMDEYISNYKFDINLNEIILSLSINQGIYNSKKEHVTSFM ISDNNEYIFCTKKAIAYSIDWDKKSVRKKKLSEAKVNDWFLFVDDYLNEEGELVINVIQKLLELNLLPSHYLDDYKLTNS WKSELKNYISYSKYNYNDVSNSLAVLGEKINPITIKNWVTNKRLIGPIYLKTFEKIFKVIDSKLDHTEVYDATKSIRSLH TKIKKSIDTFVSDNFFSSKSDIIKDEVSAVVLSMLGNTNDYVTPVQIREIHSCDKYLSPHLVNKVLDLYSVY
Sequences:
>Translated_872_residues MLTTNIHYILDNDICEIYFNKQRLTNSKYYQDNINVLNYIINEKNNNLIINYNDKYIYAIYLLNIAINSYLNNTLNPNNH ILTKLDKGMPLLYKGQIVIFKNINNTHITLGHKNKTDTTLIPIDSAYMLITYNGHLEVNSMGKTPASKTFQTKNVLSSLG FSDLKNMTGVINDSTLIILPCKDDISDLVSNIKIKDINNTYKFTELFPCSYISSTGAETDYPGNHAKQIPLLKFTTNISS AFEIIKSDKSIKNVFIIGDYPIYKHINDFERILNRKRIESVNIVTSNSNISNILDLPNIDNLNIYSWSKDVLLTYSQDFE NTSTFQKLWLDKLINKNICTTSVDSNISDLIHQARKSLYYISKYDFDISIKNSLMMCSYSLLKILENTPFNLDFLEETIK LLNLNIATPSAKLENIKYLISSTSPDLELSALFDDVIVKFERIINELSDNNTKFNTLNKLVSSYKYKTFTPNTPVILLQK QYEAIILKNLLKSRNINLQVISAEKFKDSKTIKNLIMFGFYDLKYLDILNSDLIINITLYLYNSELSKYNYYMNQINSAR NKIEKNNKIYNLLDIKPFKPTYETNKLEAYSTDSPISDDDSMDEYISNYKFDINLNEIILSLSINQGIYNSKKEHVTSFM ISDNNEYIFCTKKAIAYSIDWDKKSVRKKKLSEAKVNDWFLFVDDYLNEEGELVINVIQKLLELNLLPSHYLDDYKLTNS WKSELKNYISYSKYNYNDVSNSLAVLGEKINPITIKNWVTNKRLIGPIYLKTFEKIFKVIDSKLDHTEVYDATKSIRSLH TKIKKSIDTFVSDNFFSSKSDIIKDEVSAVVLSMLGNTNDYVTPVQIREIHSCDKYLSPHLVNKVLDLYSVY >Mature_872_residues MLTTNIHYILDNDICEIYFNKQRLTNSKYYQDNINVLNYIINEKNNNLIINYNDKYIYAIYLLNIAINSYLNNTLNPNNH ILTKLDKGMPLLYKGQIVIFKNINNTHITLGHKNKTDTTLIPIDSAYMLITYNGHLEVNSMGKTPASKTFQTKNVLSSLG FSDLKNMTGVINDSTLIILPCKDDISDLVSNIKIKDINNTYKFTELFPCSYISSTGAETDYPGNHAKQIPLLKFTTNISS AFEIIKSDKSIKNVFIIGDYPIYKHINDFERILNRKRIESVNIVTSNSNISNILDLPNIDNLNIYSWSKDVLLTYSQDFE NTSTFQKLWLDKLINKNICTTSVDSNISDLIHQARKSLYYISKYDFDISIKNSLMMCSYSLLKILENTPFNLDFLEETIK LLNLNIATPSAKLENIKYLISSTSPDLELSALFDDVIVKFERIINELSDNNTKFNTLNKLVSSYKYKTFTPNTPVILLQK QYEAIILKNLLKSRNINLQVISAEKFKDSKTIKNLIMFGFYDLKYLDILNSDLIINITLYLYNSELSKYNYYMNQINSAR NKIEKNNKIYNLLDIKPFKPTYETNKLEAYSTDSPISDDDSMDEYISNYKFDINLNEIILSLSINQGIYNSKKEHVTSFM ISDNNEYIFCTKKAIAYSIDWDKKSVRKKKLSEAKVNDWFLFVDDYLNEEGELVINVIQKLLELNLLPSHYLDDYKLTNS WKSELKNYISYSKYNYNDVSNSLAVLGEKINPITIKNWVTNKRLIGPIYLKTFEKIFKVIDSKLDHTEVYDATKSIRSLH TKIKKSIDTFVSDNFFSSKSDIIKDEVSAVVLSMLGNTNDYVTPVQIREIHSCDKYLSPHLVNKVLDLYSVY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 100915; Mature: 100915
Theoretical pI: Translated: 7.80; Mature: 7.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTTNIHYILDNDICEIYFNKQRLTNSKYYQDNINVLNYIINEKNNNLIINYNDKYIYAI CCEEEEEEEECCCEEEEEECHHHCCCCCEECCCCCEEEEEEECCCCEEEEEECCCEEEEE YLLNIAINSYLNNTLNPNNHILTKLDKGMPLLYKGQIVIFKNINNTHITLGHKNKTDTTL EEHHHHHHHHHCCCCCCCCCEEEECCCCCCEEEECEEEEEEECCCCEEEECCCCCCCCEE IPIDSAYMLITYNGHLEVNSMGKTPASKTFQTKNVLSSLGFSDLKNMTGVINDSTLIILP EEECCEEEEEEEECEEEECCCCCCCCCCCHHHHHHHHHCCHHHHHHHCCEECCCEEEEEE CKDDISDLVSNIKIKDINNTYKFTELFPCSYISSTGAETDYPGNHAKQIPLLKFTTNISS CCCCHHHHHHCCEEEECCCCEEEEEECCHHHHHCCCCCCCCCCCCCCCCEEEEEECCHHH AFEIIKSDKSIKNVFIIGDYPIYKHINDFERILNRKRIESVNIVTSNSNISNILDLPNID HHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHCCCCCCC NLNIYSWSKDVLLTYSQDFENTSTFQKLWLDKLINKNICTTSVDSNISDLIHQARKSLYY CCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCEEE ISKYDFDISIKNSLMMCSYSLLKILENTPFNLDFLEETIKLLNLNIATPSAKLENIKYLI EEEEEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEEECCCCHHHHHHHEEE SSTSPDLELSALFDDVIVKFERIINELSDNNTKFNTLNKLVSSYKYKTFTPNTPVILLQK ECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEECCCCCEEEEEC QYEAIILKNLLKSRNINLQVISAEKFKDSKTIKNLIMFGFYDLKYLDILNSDLIINITLY HHHHHHHHHHHHHCCCCEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE LYNSELSKYNYYMNQINSARNKIEKNNKIYNLLDIKPFKPTYETNKLEAYSTDSPISDDD EEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCC SMDEYISNYKFDINLNEIILSLSINQGIYNSKKEHVTSFMISDNNEYIFCTKKAIAYSID HHHHHHHCCEEEEEHHHEEEEEEECCCCCCCCHHHEEEEEEECCCCEEEEECCEEEEEEC WDKKSVRKKKLSEAKVNDWFLFVDDYLNEEGELVINVIQKLLELNLLPSHYLDDYKLTNS CCHHHHHHHHHHHCCCCCEEEEEEHHCCCCCHHHHHHHHHHHHCCCCCHHHCCCCEEHHH WKSELKNYISYSKYNYNDVSNSLAVLGEKINPITIKNWVTNKRLIGPIYLKTFEKIFKVI HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCEEECHHHHHHHHHHHHHH DSKLDHTEVYDATKSIRSLHTKIKKSIDTFVSDNFFSSKSDIIKDEVSAVVLSMLGNTND HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCC YVTPVQIREIHSCDKYLSPHLVNKVLDLYSVY CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCC >Mature Secondary Structure MLTTNIHYILDNDICEIYFNKQRLTNSKYYQDNINVLNYIINEKNNNLIINYNDKYIYAI CCEEEEEEEECCCEEEEEECHHHCCCCCEECCCCCEEEEEEECCCCEEEEEECCCEEEEE YLLNIAINSYLNNTLNPNNHILTKLDKGMPLLYKGQIVIFKNINNTHITLGHKNKTDTTL EEHHHHHHHHHCCCCCCCCCEEEECCCCCCEEEECEEEEEEECCCCEEEECCCCCCCCEE IPIDSAYMLITYNGHLEVNSMGKTPASKTFQTKNVLSSLGFSDLKNMTGVINDSTLIILP EEECCEEEEEEEECEEEECCCCCCCCCCCHHHHHHHHHCCHHHHHHHCCEECCCEEEEEE CKDDISDLVSNIKIKDINNTYKFTELFPCSYISSTGAETDYPGNHAKQIPLLKFTTNISS CCCCHHHHHHCCEEEECCCCEEEEEECCHHHHHCCCCCCCCCCCCCCCCEEEEEECCHHH AFEIIKSDKSIKNVFIIGDYPIYKHINDFERILNRKRIESVNIVTSNSNISNILDLPNID HHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHCCCCCCC NLNIYSWSKDVLLTYSQDFENTSTFQKLWLDKLINKNICTTSVDSNISDLIHQARKSLYY CCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCEEE ISKYDFDISIKNSLMMCSYSLLKILENTPFNLDFLEETIKLLNLNIATPSAKLENIKYLI EEEEEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEEECCCCHHHHHHHEEE SSTSPDLELSALFDDVIVKFERIINELSDNNTKFNTLNKLVSSYKYKTFTPNTPVILLQK ECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEECCCCCEEEEEC QYEAIILKNLLKSRNINLQVISAEKFKDSKTIKNLIMFGFYDLKYLDILNSDLIINITLY HHHHHHHHHHHHHCCCCEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE LYNSELSKYNYYMNQINSARNKIEKNNKIYNLLDIKPFKPTYETNKLEAYSTDSPISDDD EEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCC SMDEYISNYKFDINLNEIILSLSINQGIYNSKKEHVTSFMISDNNEYIFCTKKAIAYSID HHHHHHHCCEEEEEHHHEEEEEEECCCCCCCCHHHEEEEEEECCCCEEEEECCEEEEEEC WDKKSVRKKKLSEAKVNDWFLFVDDYLNEEGELVINVIQKLLELNLLPSHYLDDYKLTNS CCHHHHHHHHHHHCCCCCEEEEEEHHCCCCCHHHHHHHHHHHHCCCCCHHHCCCCEEHHH WKSELKNYISYSKYNYNDVSNSLAVLGEKINPITIKNWVTNKRLIGPIYLKTFEKIFKVI HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCEEECHHHHHHHHHHHHHH DSKLDHTEVYDATKSIRSLHTKIKKSIDTFVSDNFFSSKSDIIKDEVSAVVLSMLGNTND HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCC YVTPVQIREIHSCDKYLSPHLVNKVLDLYSVY CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA