| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
Click here to switch to the map view.
The map label for this gene is 126700728
Identifier: 126700728
GI number: 126700728
Start: 3620470
End: 3621798
Strand: Direct
Name: 126700728
Synonym: CD3111
Alternate gene names: NA
Gene position: 3620470-3621798 (Clockwise)
Preceding gene: 126700727
Following gene: 126700739
Centisome position: 84.39
GC content: 25.58
Gene sequence:
>1329_bases ATGATGAAAATAGCAGTCATAACAACCGAATTTTTAAAAGAGTTTGTAGATAATTCTATAAAAAAGTTAAATATTAATGC AGAAATTGAAATATATATCTATAGAGATTTTTCTCATGTTGGAGATTTATATTTGGAAATAGAAGATAGGTTTGATGGAT TTGCAGTTAGTGGCCCTATCCCCAAAAAAGCTATTACAAAAAAGGCTGGAACTATAAAAAAACCTCTAGTTGATTTTAGT ACTGACTTACAAAGTTACTATGATATGTTTCTAAAGCTTATCTTTAAATATAATACATTAGATTTTTCTAGAGCATACTT TGACTTAACAGACTGGGCAGATAATCCAAAAGATATATCATATTATTTATCAAATGGCACATTTGGAGACTTAATGGATA GTATTGATGAAAATGCATCTAAAATGAGTTTATCTGACATAGCAAAACTTGAAAAAAAGATTGCAAAAAAACATATTAAT CTATGGAATGAAGGGAAAATCGATTTTTCTACTACTCGTTTTAGTAGTATTGTTCCTATGTTACAAAATGCAGGAGTAAA CTTTCATTTCATATACCCTGATATAGATTTATTAAAAAATACTTTTAATAACTTAATAAAAGATATTCATTTACATAGAA TGAAGGGAAATCAACCAAGTGTAATATATATAACAGTTAAAGATACAAATTATGATGACTCTACTCTAGACCAAGTTTAT AAAATATTAAATAGTATTAAAAAAGATAAATTAACCGATTTTATAATTGAAAAAAATAGTAATTCTTTTAAAATTTTCAC TAAATGTGAAACGATTAAATCATTAACTAAAAATTTTACTGCATGTTATATAAAAGAATCTATTGAAAATAGTACAAATA TTAAAGTATGTGTTGGATATGGAATTGGTAATGATATAAAGCAAGCTATGTCTAGTGCCATAAGTGCTAATAAGGAATCT AAAATAAATCATTTAAATTACAGTTTCTTAGTTAACGAAAATTATGAGACAATAGGACCTTTACTGTGTGATAAGTTACT TACTGTTTCAAATAAAGTAACTCCACATATAAATACAATTGCCAAAAGTTCTAAATTGTCTACTCTTACTATTCAAAAGA TTATATCTGTTACTGAAATTCTACAAAGAGATGAAGTTACTCCTAAGGAATTATCTTCATGTTTAAATGTAACAGTTAGA ACTGCTAATAGATTTCTAAGTAGTCTCTTAAAGTCTGGAAACGCTACTATATTATATGAAAAACAAAACTCAACAAAAGG TAGACCTGAAAGGGTATACAAATTATTTATATCAGAAAATAAATATTAA
Upstream 100 bases:
>100_bases ATTTTAATTGAATTTAATTGAAATACGATTTTAACTAGAACAATAGATTAATGTAATATTTAATATAAAATAATTATAAT AATTGAAAAGGAAGTAATCT
Downstream 100 bases:
>100_bases AATCCAAAATGCATAAAAATATTTTATCATCTAATATTAAGTAAAATTATATATGACTTTCTAAAAGGTATATCTTTGCA TCTTTTTAAGATATACCTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 442; Mature: 442
Protein sequence:
>442_residues MMKIAVITTEFLKEFVDNSIKKLNINAEIEIYIYRDFSHVGDLYLEIEDRFDGFAVSGPIPKKAITKKAGTIKKPLVDFS TDLQSYYDMFLKLIFKYNTLDFSRAYFDLTDWADNPKDISYYLSNGTFGDLMDSIDENASKMSLSDIAKLEKKIAKKHIN LWNEGKIDFSTTRFSSIVPMLQNAGVNFHFIYPDIDLLKNTFNNLIKDIHLHRMKGNQPSVIYITVKDTNYDDSTLDQVY KILNSIKKDKLTDFIIEKNSNSFKIFTKCETIKSLTKNFTACYIKESIENSTNIKVCVGYGIGNDIKQAMSSAISANKES KINHLNYSFLVNENYETIGPLLCDKLLTVSNKVTPHINTIAKSSKLSTLTIQKIISVTEILQRDEVTPKELSSCLNVTVR TANRFLSSLLKSGNATILYEKQNSTKGRPERVYKLFISENKY
Sequences:
>Translated_442_residues MMKIAVITTEFLKEFVDNSIKKLNINAEIEIYIYRDFSHVGDLYLEIEDRFDGFAVSGPIPKKAITKKAGTIKKPLVDFS TDLQSYYDMFLKLIFKYNTLDFSRAYFDLTDWADNPKDISYYLSNGTFGDLMDSIDENASKMSLSDIAKLEKKIAKKHIN LWNEGKIDFSTTRFSSIVPMLQNAGVNFHFIYPDIDLLKNTFNNLIKDIHLHRMKGNQPSVIYITVKDTNYDDSTLDQVY KILNSIKKDKLTDFIIEKNSNSFKIFTKCETIKSLTKNFTACYIKESIENSTNIKVCVGYGIGNDIKQAMSSAISANKES KINHLNYSFLVNENYETIGPLLCDKLLTVSNKVTPHINTIAKSSKLSTLTIQKIISVTEILQRDEVTPKELSSCLNVTVR TANRFLSSLLKSGNATILYEKQNSTKGRPERVYKLFISENKY >Mature_442_residues MMKIAVITTEFLKEFVDNSIKKLNINAEIEIYIYRDFSHVGDLYLEIEDRFDGFAVSGPIPKKAITKKAGTIKKPLVDFS TDLQSYYDMFLKLIFKYNTLDFSRAYFDLTDWADNPKDISYYLSNGTFGDLMDSIDENASKMSLSDIAKLEKKIAKKHIN LWNEGKIDFSTTRFSSIVPMLQNAGVNFHFIYPDIDLLKNTFNNLIKDIHLHRMKGNQPSVIYITVKDTNYDDSTLDQVY KILNSIKKDKLTDFIIEKNSNSFKIFTKCETIKSLTKNFTACYIKESIENSTNIKVCVGYGIGNDIKQAMSSAISANKES KINHLNYSFLVNENYETIGPLLCDKLLTVSNKVTPHINTIAKSSKLSTLTIQKIISVTEILQRDEVTPKELSSCLNVTVR TANRFLSSLLKSGNATILYEKQNSTKGRPERVYKLFISENKY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50468; Mature: 50468
Theoretical pI: Translated: 9.04; Mature: 9.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMKIAVITTEFLKEFVDNSIKKLNINAEIEIYIYRDFSHVGDLYLEIEDRFDGFAVSGPI CEEEEEEHHHHHHHHHCCCCEEEECCEEEEEEEEECCCCCCCEEEEEECCCCCEEECCCC PKKAITKKAGTIKKPLVDFSTDLQSYYDMFLKLIFKYNTLDFSRAYFDLTDWADNPKDIS CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEEECCCCCCCCCEE YYLSNGTFGDLMDSIDENASKMSLSDIAKLEKKIAKKHINLWNEGKIDFSTTRFSSIVPM EEECCCCHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHH LQNAGVNFHFIYPDIDLLKNTFNNLIKDIHLHRMKGNQPSVIYITVKDTNYDDSTLDQVY HHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHH KILNSIKKDKLTDFIIEKNSNSFKIFTKCETIKSLTKNFTACYIKESIENSTNIKVCVGY HHHHHHHHHHHHHEEEECCCCCEEEEEHHHHHHHHHCCHHEEEEEHHCCCCCCEEEEEEC GIGNDIKQAMSSAISANKESKINHLNYSFLVNENYETIGPLLCDKLLTVSNKVTPHINTI CCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHH AKSSKLSTLTIQKIISVTEILQRDEVTPKELSSCLNVTVRTANRFLSSLLKSGNATILYE HCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE KQNSTKGRPERVYKLFISENKY CCCCCCCCHHHHEEEEECCCCC >Mature Secondary Structure MMKIAVITTEFLKEFVDNSIKKLNINAEIEIYIYRDFSHVGDLYLEIEDRFDGFAVSGPI CEEEEEEHHHHHHHHHCCCCEEEECCEEEEEEEEECCCCCCCEEEEEECCCCCEEECCCC PKKAITKKAGTIKKPLVDFSTDLQSYYDMFLKLIFKYNTLDFSRAYFDLTDWADNPKDIS CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEEECCCCCCCCCEE YYLSNGTFGDLMDSIDENASKMSLSDIAKLEKKIAKKHINLWNEGKIDFSTTRFSSIVPM EEECCCCHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHH LQNAGVNFHFIYPDIDLLKNTFNNLIKDIHLHRMKGNQPSVIYITVKDTNYDDSTLDQVY HHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHH KILNSIKKDKLTDFIIEKNSNSFKIFTKCETIKSLTKNFTACYIKESIENSTNIKVCVGY HHHHHHHHHHHHHEEEECCCCCEEEEEHHHHHHHHHCCHHEEEEEHHCCCCCCEEEEEEC GIGNDIKQAMSSAISANKESKINHLNYSFLVNENYETIGPLLCDKLLTVSNKVTPHINTI CCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHH AKSSKLSTLTIQKIISVTEILQRDEVTPKELSSCLNVTVRTANRFLSSLLKSGNATILYE HCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE KQNSTKGRPERVYKLFISENKY CCCCCCCCHHHHEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA