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The map label for this gene is xylR [H]

Identifier: 126700683

GI number: 126700683

Start: 3561800

End: 3562960

Strand: Direct

Name: xylR [H]

Synonym: CD3066

Alternate gene names: 126700683

Gene position: 3561800-3562960 (Clockwise)

Preceding gene: 126700660

Following gene: 126700690

Centisome position: 83.02

GC content: 28.77

Gene sequence:

>1161_bases
TTGGTTACTGATAAATACACTATTCGAGAAATGAATGAAAGATTGGTACTTGAACAAATTATAAAAAATGGTCCTATTTC
TAGGGCAAGTATAGCTTCTACTATAGGATTGAATAAAGCAACTATATCCGCTATTACCAAAAAACTTATTGATGAATCTC
TAGTTCATGAAATAGGAATTGGAAATAGTACTCATAGTGGCGGAAGAAAACCCATATTATTAGTATTTAATAAATGTGCA
GGGATTTCTTTAAGTATGGACATTGGATACGACTATATATTTTCTTCTCTATCTTACTTAGATGGAACTATTATAAATTC
TAAGAAATTAACAGATATACAAGTAAGTAAAGACAATGTTATACAATTGATAGATGAAATTATAAATAGTTATAACATAT
CCAAAATAGACACTCCTTATAAGGTAATTGGTCTTACTTTGGCTATACATGGGATTACTTGTGAAAATAAAGTATTGTTT
ACTCCATATTACAATCTTAATGAGATTGACTTATATAGCATCCTTAGCAAAAAGTATGACTTTCCTATTCACATAGAAAA
TGAAGCAAACTTAACAGCTTTAGCTGAGAATACTTTTTCAACTGTACATAACTCACTACTTAGTCTCAGTATTCACAGTG
GATTTGGTTCAGGCATTATAATAAATAATAAATTATATAGTGGCAGAAATGGTATGAGTGGAGAAATTGGTCACACTATC
ATCATGCCTAATGGTAAACTATGTCCTTGTGGAAATCGTGGCTGTTTAGAACAGTATTGTTCAGAAAAAAAGGTATTTGA
ACAGCTTTCTTCTTTAGAAAATATTCCTAAAATAGATTCTGATATAGTAAAGCAACTATATTATGAAGATAACCAGAATG
CCAAAAAAGTTATTCATGAGTTTTGTAGTTACTTAACAATAGCTATAAATAATGCTATTACAACTTATGCTCCTGAAATA
ATATATTTAAATAGCCAAATAATTAGTGATATCCCTGAGATATTACAGATTACAAAAGATATGTTAGTTAGCTCTTTTAA
CAAAGGAATAAATATAGAAATTTCATCATTAGGGTCTGAGGCATCTCTATATGGTGGCTCTGCCGTAAATATCAAGAGCT
TTTTGAATATACAAAATTTAACTTTAATTAATGAAATATAA

Upstream 100 bases:

>100_bases
GAACTAATAATAAAATATTTAATTATCTTTGTCAATGCAAAATAACCTTTTATTTTTGTGTAAAAAGTATTACAATATTA
TTTTAAGGAGGAATATCAAA

Downstream 100 bases:

>100_bases
GGGTTATGACTATATACAGCCATAACCCTTTAAATTATACATTCTAAAATTAGATTTATTATATAGTTTATGCAAGATTA
GCTATATTTTTTAAAAATTG

Product: xylose repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MVTDKYTIREMNERLVLEQIIKNGPISRASIASTIGLNKATISAITKKLIDESLVHEIGIGNSTHSGGRKPILLVFNKCA
GISLSMDIGYDYIFSSLSYLDGTIINSKKLTDIQVSKDNVIQLIDEIINSYNISKIDTPYKVIGLTLAIHGITCENKVLF
TPYYNLNEIDLYSILSKKYDFPIHIENEANLTALAENTFSTVHNSLLSLSIHSGFGSGIIINNKLYSGRNGMSGEIGHTI
IMPNGKLCPCGNRGCLEQYCSEKKVFEQLSSLENIPKIDSDIVKQLYYEDNQNAKKVIHEFCSYLTIAINNAITTYAPEI
IYLNSQIISDIPEILQITKDMLVSSFNKGINIEISSLGSEASLYGGSAVNIKSFLNIQNLTLINEI

Sequences:

>Translated_386_residues
MVTDKYTIREMNERLVLEQIIKNGPISRASIASTIGLNKATISAITKKLIDESLVHEIGIGNSTHSGGRKPILLVFNKCA
GISLSMDIGYDYIFSSLSYLDGTIINSKKLTDIQVSKDNVIQLIDEIINSYNISKIDTPYKVIGLTLAIHGITCENKVLF
TPYYNLNEIDLYSILSKKYDFPIHIENEANLTALAENTFSTVHNSLLSLSIHSGFGSGIIINNKLYSGRNGMSGEIGHTI
IMPNGKLCPCGNRGCLEQYCSEKKVFEQLSSLENIPKIDSDIVKQLYYEDNQNAKKVIHEFCSYLTIAINNAITTYAPEI
IYLNSQIISDIPEILQITKDMLVSSFNKGINIEISSLGSEASLYGGSAVNIKSFLNIQNLTLINEI
>Mature_386_residues
MVTDKYTIREMNERLVLEQIIKNGPISRASIASTIGLNKATISAITKKLIDESLVHEIGIGNSTHSGGRKPILLVFNKCA
GISLSMDIGYDYIFSSLSYLDGTIINSKKLTDIQVSKDNVIQLIDEIINSYNISKIDTPYKVIGLTLAIHGITCENKVLF
TPYYNLNEIDLYSILSKKYDFPIHIENEANLTALAENTFSTVHNSLLSLSIHSGFGSGIIINNKLYSGRNGMSGEIGHTI
IMPNGKLCPCGNRGCLEQYCSEKKVFEQLSSLENIPKIDSDIVKQLYYEDNQNAKKVIHEFCSYLTIAINNAITTYAPEI
IYLNSQIISDIPEILQITKDMLVSSFNKGINIEISSLGSEASLYGGSAVNIKSFLNIQNLTLINEI

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI1786891, Length=400, Percent_Identity=25.5, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI1787878, Length=385, Percent_Identity=23.8961038961039, Blast_Score=95, Evalue=8e-21,
Organism=Escherichia coli, GI87082127, Length=255, Percent_Identity=22.7450980392157, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1790522, Length=271, Percent_Identity=22.8782287822878, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787363, Length=216, Percent_Identity=22.6851851851852, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 42683; Mature: 42683

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: PS01125 ROK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTDKYTIREMNERLVLEQIIKNGPISRASIASTIGLNKATISAITKKLIDESLVHEIGI
CCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
GNSTHSGGRKPILLVFNKCAGISLSMDIGYDYIFSSLSYLDGTIINSKKLTDIQVSKDNV
CCCCCCCCCCEEEEEEECCCCCEEEEECCHHHHHHHHHHHCCEEECCCCCEEEEECHHHH
IQLIDEIINSYNISKIDTPYKVIGLTLAIHGITCENKVLFTPYYNLNEIDLYSILSKKYD
HHHHHHHHCCCCCCCCCCCHHHEEEEEEEEEEEECCEEEECCCCCCCCHHHHHHHHHCCC
FPIHIENEANLTALAENTFSTVHNSLLSLSIHSGFGSGIIINNKLYSGRNGMSGEIGHTI
CCEEECCCCCEEEEHHHHHHHHHHHHHEEEEECCCCCCEEEECEEECCCCCCCCCCCEEE
IMPNGKLCPCGNRGCLEQYCSEKKVFEQLSSLENIPKIDSDIVKQLYYEDNQNAKKVIHE
ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHH
FCSYLTIAINNAITTYAPEIIYLNSQIISDIPEILQITKDMLVSSFNKGINIEISSLGSE
HHHHHHHHHCCCHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
ASLYGGSAVNIKSFLNIQNLTLINEI
CCCCCCCEECHHHHHCHHHEEEEECC
>Mature Secondary Structure
MVTDKYTIREMNERLVLEQIIKNGPISRASIASTIGLNKATISAITKKLIDESLVHEIGI
CCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
GNSTHSGGRKPILLVFNKCAGISLSMDIGYDYIFSSLSYLDGTIINSKKLTDIQVSKDNV
CCCCCCCCCCEEEEEEECCCCCEEEEECCHHHHHHHHHHHCCEEECCCCCEEEEECHHHH
IQLIDEIINSYNISKIDTPYKVIGLTLAIHGITCENKVLFTPYYNLNEIDLYSILSKKYD
HHHHHHHHCCCCCCCCCCCHHHEEEEEEEEEEEECCEEEECCCCCCCCHHHHHHHHHCCC
FPIHIENEANLTALAENTFSTVHNSLLSLSIHSGFGSGIIINNKLYSGRNGMSGEIGHTI
CCEEECCCCCEEEEHHHHHHHHHHHHHEEEEECCCCCCEEEECEEECCCCCCCCCCCEEE
IMPNGKLCPCGNRGCLEQYCSEKKVFEQLSSLENIPKIDSDIVKQLYYEDNQNAKKVIHE
ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHH
FCSYLTIAINNAITTYAPEIIYLNSQIISDIPEILQITKDMLVSSFNKGINIEISSLGSE
HHHHHHHHHCCCHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
ASLYGGSAVNIKSFLNIQNLTLINEI
CCCCCCCEECHHHHHCHHHEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2544559 [H]