Definition Clostridium difficile 630 chromosome, complete genome.
Accession NC_009089
Length 4,290,252

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The map label for this gene is 126700301

Identifier: 126700301

GI number: 126700301

Start: 3106455

End: 3106916

Strand: Direct

Name: 126700301

Synonym: CD2687

Alternate gene names: NA

Gene position: 3106455-3106916 (Clockwise)

Preceding gene: 126700295

Following gene: 126700306

Centisome position: 72.41

GC content: 23.81

Gene sequence:

>462_bases
GTGCAAATAGAACAACTCGATTTAGAAACGAGAAATAAAATATACTGCTATACTAAAAAAATTCTTAGAAAATATCAAAA
AGGCATAACATCTGGAAAATTAACAGCAGATAAATTTGCAGATAATATATTGTCTCAAGATTTTATCAGTAGTATACTTA
ATGAAAAAATAGTCAATGAGACAAACTTTAAGATATCTTATAGAAACTATATAGAAACTTTAATAAATATTCAAAATGAA
AATTTATCTAACTTAAGAAAAAAATCTACTAAAACTGCAAAATGTTTCAATATCTCTCAAATAACCCAATTAAAAAACTT
ACTAAGTAATACTGGTTATAATTTATTAATTCCATATAAATACTTAACTGCTAGAGATATAGAAGGAATCGTTACTCTTA
TTAATACTGGGTCTATTGAACTTGGAAATGAGAGAATCTACAATTATATATCAAAAGCATAA

Upstream 100 bases:

>100_bases
ATTTTATGACTTAGTATTTATTGTAAATAAGTTATTGAAGCTTTATTAGTTAAGTATAGATTTTTAATAAATATTTTTAT
AATTAGAAGGAAGTGGTTTT

Downstream 100 bases:

>100_bases
TAATTTAAACCTATTATAAAAAGGCAATTTATTTAATAAAAAATATTTTTAATATTAAATAAATTGCCTTTTTAATTTTG
GACTAAATACTGCTATCCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MQIEQLDLETRNKIYCYTKKILRKYQKGITSGKLTADKFADNILSQDFISSILNEKIVNETNFKISYRNYIETLINIQNE
NLSNLRKKSTKTAKCFNISQITQLKNLLSNTGYNLLIPYKYLTARDIEGIVTLINTGSIELGNERIYNYISKA

Sequences:

>Translated_153_residues
MQIEQLDLETRNKIYCYTKKILRKYQKGITSGKLTADKFADNILSQDFISSILNEKIVNETNFKISYRNYIETLINIQNE
NLSNLRKKSTKTAKCFNISQITQLKNLLSNTGYNLLIPYKYLTARDIEGIVTLINTGSIELGNERIYNYISKA
>Mature_153_residues
MQIEQLDLETRNKIYCYTKKILRKYQKGITSGKLTADKFADNILSQDFISSILNEKIVNETNFKISYRNYIETLINIQNE
NLSNLRKKSTKTAKCFNISQITQLKNLLSNTGYNLLIPYKYLTARDIEGIVTLINTGSIELGNERIYNYISKA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17704; Mature: 17704

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIEQLDLETRNKIYCYTKKILRKYQKGITSGKLTADKFADNILSQDFISSILNEKIVNE
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
TNFKISYRNYIETLINIQNENLSNLRKKSTKTAKCFNISQITQLKNLLSNTGYNLLIPYK
CCCEEHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHCCHHHHHHHHHHHHCCCCEEEEEHH
YLTARDIEGIVTLINTGSIELGNERIYNYISKA
HHHHHHHHHHHHEEECCCEEECHHHHHHHHHCC
>Mature Secondary Structure
MQIEQLDLETRNKIYCYTKKILRKYQKGITSGKLTADKFADNILSQDFISSILNEKIVNE
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
TNFKISYRNYIETLINIQNENLSNLRKKSTKTAKCFNISQITQLKNLLSNTGYNLLIPYK
CCCEEHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHCCHHHHHHHHHHHHCCCCEEEEEHH
YLTARDIEGIVTLINTGSIELGNERIYNYISKA
HHHHHHHHHHHHEEECCCEEECHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA