Click here to switch to the map view.

The map label for this gene is intR [C]

Identifier: 126700136

GI number: 126700136

Start: 2910276

End: 2911394

Strand: Direct

Name: intR [C]

Synonym: CD2519

Alternate gene names: 126700136

Gene position: 2910276-2911394 (Clockwise)

Preceding gene: 126700132

Following gene: 126700142

Centisome position: 67.83

GC content: 27.08

Gene sequence:

>1119_bases
ATGAATATCAAATCAGCTTTTATAAGAAAAAGAGGGGAAAAATTCTATGTATATGTGGAGTACATAGAGGAAACAACTGG
CAAGATAAAACAGAAAAGTTACGGAAGTTATGAAAAGAAAAAGGATGCTGAAAAACATTTAATTGAAATAAAGTCTACTA
TAAACAATAATAAGTTTGTTGCTCCAAAAGATATAACATTTGTAGAAAGATGTTATAAATATATAGACATGAATAAAAAT
AATTGGTCTCCATATACTGTTACAAGTACAAAATCTTGGGTTAAAAATTACATAGAACCTTTTTTTAAGAATCTAAAACT
CACAGAAGTAAATCCTAGTTCAGTACAAGCTTTTGTAAATTATAACTTTAATAATTCTACCTTTACTAGTGCTAAAGTAA
GGTATAGCTTTCTAAGTTCTGTAATAAGGGAAGCATATAGATTAAGAGAAATACAAGAAAATTCATGTGATTTTATAAAA
CTTCCTTCTAAAGAAAAATATTCTACAAATGAAATATACAATAGAGAAGAAGTATTATTGCTAATAGAAAAGTTACTTGG
TAATAATATAGAAATACCTATTCTTTTAATGTTACTTCTAGGTTTAAGAATGGGAGAAGCTACTGGGCTTAGGTGGTCAG
ATGTTGACTTAGATAACAATCTGATAAATGTTAATCAAATTCTTGTCTATTCTAATGGCAAAATATCTTTTAAAGAGCCA
AAAACACCAAAATCAAAAAGAGCTTTATCAGCTCCAAAAGAATTAATTGAAAAATTGAAAATAGAAAAACTAAGACAAAG
CAAATTAAAATTGCAAGGTATCCTGGAAAACAAAAATAACTTAGTTTGTCTAAACACCAATTTAAATCCGTTTCTACCTT
CTTCACTAAGAAAAACGTTTCATAATTTTACAAAAAAAAATAATCTAAAAAAAATTAGAATACATGATTTAAGACATACA
AGTGCTACTCTACTGCTTTTGGGAGGTACTAATATGAAAGTTGTTTCTGAAAGATTGGGTCATACAGATATAAAAATAAC
TATGAATAGATATTCTCATGTACTTAAAGAAATGGACAAAGAAGCTTCCGACAATCTAAGCGAACTTCTATTTAAATAG

Upstream 100 bases:

>100_bases
ACGTGTTATAATGTAACTGTAAAGAATTAAAAAGATAATGACATAATTAGAGCAGTCCAACTGTTCTTTTATAAAACCAA
CTTATAAAGGGAGTGTACAT

Downstream 100 bases:

>100_bases
TAAAAACTGACTGTCAGTTAAATGTCAGTTAAACCTAAAAAATAGGTTTTGTCAGTTGATTGCCAGTCAATTATTTTATA
ATAGTTTCACTTAAAAACGT

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MNIKSAFIRKRGEKFYVYVEYIEETTGKIKQKSYGSYEKKKDAEKHLIEIKSTINNNKFVAPKDITFVERCYKYIDMNKN
NWSPYTVTSTKSWVKNYIEPFFKNLKLTEVNPSSVQAFVNYNFNNSTFTSAKVRYSFLSSVIREAYRLREIQENSCDFIK
LPSKEKYSTNEIYNREEVLLLIEKLLGNNIEIPILLMLLLGLRMGEATGLRWSDVDLDNNLINVNQILVYSNGKISFKEP
KTPKSKRALSAPKELIEKLKIEKLRQSKLKLQGILENKNNLVCLNTNLNPFLPSSLRKTFHNFTKKNNLKKIRIHDLRHT
SATLLLLGGTNMKVVSERLGHTDIKITMNRYSHVLKEMDKEASDNLSELLFK

Sequences:

>Translated_372_residues
MNIKSAFIRKRGEKFYVYVEYIEETTGKIKQKSYGSYEKKKDAEKHLIEIKSTINNNKFVAPKDITFVERCYKYIDMNKN
NWSPYTVTSTKSWVKNYIEPFFKNLKLTEVNPSSVQAFVNYNFNNSTFTSAKVRYSFLSSVIREAYRLREIQENSCDFIK
LPSKEKYSTNEIYNREEVLLLIEKLLGNNIEIPILLMLLLGLRMGEATGLRWSDVDLDNNLINVNQILVYSNGKISFKEP
KTPKSKRALSAPKELIEKLKIEKLRQSKLKLQGILENKNNLVCLNTNLNPFLPSSLRKTFHNFTKKNNLKKIRIHDLRHT
SATLLLLGGTNMKVVSERLGHTDIKITMNRYSHVLKEMDKEASDNLSELLFK
>Mature_372_residues
MNIKSAFIRKRGEKFYVYVEYIEETTGKIKQKSYGSYEKKKDAEKHLIEIKSTINNNKFVAPKDITFVERCYKYIDMNKN
NWSPYTVTSTKSWVKNYIEPFFKNLKLTEVNPSSVQAFVNYNFNNSTFTSAKVRYSFLSSVIREAYRLREIQENSCDFIK
LPSKEKYSTNEIYNREEVLLLIEKLLGNNIEIPILLMLLLGLRMGEATGLRWSDVDLDNNLINVNQILVYSNGKISFKEP
KTPKSKRALSAPKELIEKLKIEKLRQSKLKLQGILENKNNLVCLNTNLNPFLPSSLRKTFHNFTKKNNLKKIRIHDLRHT
SATLLLLGGTNMKVVSERLGHTDIKITMNRYSHVLKEMDKEASDNLSELLFK

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 43333; Mature: 43333

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIKSAFIRKRGEKFYVYVEYIEETTGKIKQKSYGSYEKKKDAEKHLIEIKSTINNNKFV
CCCHHHHHHHCCCEEEEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEE
APKDITFVERCYKYIDMNKNNWSPYTVTSTKSWVKNYIEPFFKNLKLTEVNPSSVQAFVN
CCCCCHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHCCEEEECCHHHEEEEEE
YNFNNSTFTSAKVRYSFLSSVIREAYRLREIQENSCDFIKLPSKEKYSTNEIYNREEVLL
ECCCCCEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHCCHHHHHH
LIEKLLGNNIEIPILLMLLLGLRMGEATGLRWSDVDLDNNLINVNQILVYSNGKISFKEP
HHHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEEEEEEECCEEEECCC
KTPKSKRALSAPKELIEKLKIEKLRQSKLKLQGILENKNNLVCLNTNLNPFLPSSLRKTF
CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHH
HNFTKKNNLKKIRIHDLRHTSATLLLLGGTNMKVVSERLGHTDIKITMNRYSHVLKEMDK
HHHHHHCCCEEEEEEECCCCCEEEEEECCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHH
EASDNLSELLFK
HHCCCHHHHHCC
>Mature Secondary Structure
MNIKSAFIRKRGEKFYVYVEYIEETTGKIKQKSYGSYEKKKDAEKHLIEIKSTINNNKFV
CCCHHHHHHHCCCEEEEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEE
APKDITFVERCYKYIDMNKNNWSPYTVTSTKSWVKNYIEPFFKNLKLTEVNPSSVQAFVN
CCCCCHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHCCEEEECCHHHEEEEEE
YNFNNSTFTSAKVRYSFLSSVIREAYRLREIQENSCDFIKLPSKEKYSTNEIYNREEVLL
ECCCCCEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHCCHHHHHH
LIEKLLGNNIEIPILLMLLLGLRMGEATGLRWSDVDLDNNLINVNQILVYSNGKISFKEP
HHHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEEEEEEECCEEEECCC
KTPKSKRALSAPKELIEKLKIEKLRQSKLKLQGILENKNNLVCLNTNLNPFLPSSLRKTF
CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHH
HNFTKKNNLKKIRIHDLRHTSATLLLLGGTNMKVVSERLGHTDIKITMNRYSHVLKEMDK
HHHHHHCCCEEEEEEECCCCCEEEEEECCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHH
EASDNLSELLFK
HHCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]