| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is yxeH [H]
Identifier: 126699975
GI number: 126699975
Start: 2728293
End: 2729114
Strand: Direct
Name: yxeH [H]
Synonym: CD2359
Alternate gene names: 126699975
Gene position: 2728293-2729114 (Clockwise)
Preceding gene: 126699969
Following gene: 126699988
Centisome position: 63.59
GC content: 28.71
Gene sequence:
>822_bases ATGTACAAATTAATCGCACTAGACATTGATGGAACAATATTAAATACACAAAAAAGGATTACTCCTGAAGTCTTTGAGTC CATTCAGGAGGCAAAAAGGGCTGGGGCAAAAGTAGTTATAACAACAGGCAGACCTCTTCCTGGTGTAAAAGAACTTCTAA ATCAACTAAATTTAACAGATGAAGGTGATTATGTTATATGCTTTAATGGAGCAATTATTCAAGAAGTTAAAAGTGAGAAA ATCATACATGATGTAGAAATGAGTTTAGATGATTTTGATTTTATATATAATAACGTTTGTAAAAAATATAAGACTAAAAT ACACATAAATACAATGACAAATTTAATTACACCAAATGAAACGCCTGGCAAATATACACTTCATGAAGCGAAATTAAATA ATATAGAAGTCAAATATATACAAAAAGATAAAATTGATGAATCTATTAAAATCTGTAAAATTATGATAGTTGATGAACCA GAAAGATTGGAAGAAATCATACAGCAACTACCTAAAAATTTATTCAATAAATATACTATAGTAAGGTCTGCTCCTTTTTA TCTAGAATTTTTAGGTAAAACTACTAATAAAGGAACTGCTCTTAAAACATTATGTACGAATCTAAATATACCTATAGAAA ATGCTATTGCTGTTGGCGATGAAGAAAATGACCAACATATGATAAAGTATGCAGGTCTTGGTGTGGCTATGGGGAATGCA CGTAATAGTATAAAGGAAATTGCAGATTATGTTACTGATACTAATAATGAAAATGGAGTTGCAAAGGTTATAAATAAATA TATACTTAATAAGGCTATCTAA
Upstream 100 bases:
>100_bases TATACAAAACAAACCATATTTCCCACTGAAACTTTGTTCAACACTAGCCGTGTCAACGTTTTCACAGGAAATTTGAGTAT ATAATTTATTGGAGGTTGAT
Downstream 100 bases:
>100_bases TCATCTAAAAAAAACTAAAAATATACCTTTAGATTTAAATACTTTTCACATCCCTACTCTATACTAATTTATATAGTATG GATATTACCTATCATTTTTA
Product: hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 273; Mature: 273
Protein sequence:
>273_residues MYKLIALDIDGTILNTQKRITPEVFESIQEAKRAGAKVVITTGRPLPGVKELLNQLNLTDEGDYVICFNGAIIQEVKSEK IIHDVEMSLDDFDFIYNNVCKKYKTKIHINTMTNLITPNETPGKYTLHEAKLNNIEVKYIQKDKIDESIKICKIMIVDEP ERLEEIIQQLPKNLFNKYTIVRSAPFYLEFLGKTTNKGTALKTLCTNLNIPIENAIAVGDEENDQHMIKYAGLGVAMGNA RNSIKEIADYVTDTNNENGVAKVINKYILNKAI
Sequences:
>Translated_273_residues MYKLIALDIDGTILNTQKRITPEVFESIQEAKRAGAKVVITTGRPLPGVKELLNQLNLTDEGDYVICFNGAIIQEVKSEK IIHDVEMSLDDFDFIYNNVCKKYKTKIHINTMTNLITPNETPGKYTLHEAKLNNIEVKYIQKDKIDESIKICKIMIVDEP ERLEEIIQQLPKNLFNKYTIVRSAPFYLEFLGKTTNKGTALKTLCTNLNIPIENAIAVGDEENDQHMIKYAGLGVAMGNA RNSIKEIADYVTDTNNENGVAKVINKYILNKAI >Mature_273_residues MYKLIALDIDGTILNTQKRITPEVFESIQEAKRAGAKVVITTGRPLPGVKELLNQLNLTDEGDYVICFNGAIIQEVKSEK IIHDVEMSLDDFDFIYNNVCKKYKTKIHINTMTNLITPNETPGKYTLHEAKLNNIEVKYIQKDKIDESIKICKIMIVDEP ERLEEIIQQLPKNLFNKYTIVRSAPFYLEFLGKTTNKGTALKTLCTNLNIPIENAIAVGDEENDQHMIKYAGLGVAMGNA RNSIKEIADYVTDTNNENGVAKVINKYILNKAI
Specific function: Unknown
COG id: COG0561
COG function: function code R; Predicted hydrolases of the HAD superfamily
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HAD-like hydrolase superfamily. Cof family [H]
Homologues:
Organism=Escherichia coli, GI2367265, Length=268, Percent_Identity=41.044776119403, Blast_Score=221, Evalue=5e-59, Organism=Escherichia coli, GI1787043, Length=271, Percent_Identity=25.4612546125461, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI48994981, Length=281, Percent_Identity=23.8434163701068, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI87081741, Length=247, Percent_Identity=24.6963562753036, Blast_Score=72, Evalue=4e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006379 - InterPro: IPR000150 - InterPro: IPR006380 [H]
Pfam domain/function: PF00702 Hydrolase; PF05116 S6PP [H]
EC number: NA
Molecular weight: Translated: 30840; Mature: 30840
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: PS01228 COF_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYKLIALDIDGTILNTQKRITPEVFESIQEAKRAGAKVVITTGRPLPGVKELLNQLNLTD CEEEEEEECCCEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCC EGDYVICFNGAIIQEVKSEKIIHDVEMSLDDFDFIYNNVCKKYKTKIHINTMTNLITPNE CCCEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEEEEHHHEECCCC TPGKYTLHEAKLNNIEVKYIQKDKIDESIKICKIMIVDEPERLEEIIQQLPKNLFNKYTI CCCCEEEEECCCCCEEEEEEECCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHEEE VRSAPFYLEFLGKTTNKGTALKTLCTNLNIPIENAIAVGDEENDQHMIKYAGLGVAMGNA EECCCHHHHHHCCCCCCCHHHHHHHHCCCCCHHCEEEECCCCCCCEEEEEECCEEEECCH RNSIKEIADYVTDTNNENGVAKVINKYILNKAI HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure MYKLIALDIDGTILNTQKRITPEVFESIQEAKRAGAKVVITTGRPLPGVKELLNQLNLTD CEEEEEEECCCEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCC EGDYVICFNGAIIQEVKSEKIIHDVEMSLDDFDFIYNNVCKKYKTKIHINTMTNLITPNE CCCEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEEEEHHHEECCCC TPGKYTLHEAKLNNIEVKYIQKDKIDESIKICKIMIVDEPERLEEIIQQLPKNLFNKYTI CCCCEEEEECCCCCEEEEEEECCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHEEE VRSAPFYLEFLGKTTNKGTALKTLCTNLNIPIENAIAVGDEENDQHMIKYAGLGVAMGNA EECCCHHHHHHCCCCCCCHHHHHHHHCCCCCHHCEEEECCCCCCCEEEEEECCEEEECCH RNSIKEIADYVTDTNNENGVAKVINKYILNKAI HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8867804; 9384377 [H]