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The map label for this gene is ydeF [H]

Identifier: 126699900

GI number: 126699900

Start: 2651915

End: 2653300

Strand: Direct

Name: ydeF [H]

Synonym: CD2285

Alternate gene names: 126699900

Gene position: 2651915-2653300 (Clockwise)

Preceding gene: 126699899

Following gene: 126699901

Centisome position: 61.81

GC content: 31.39

Gene sequence:

>1386_bases
ATGCCAATTAATTCTTTTGAAAATTATCCTATGAACTGGAAACCAAAGAGACCTTCAAAAGGGCAAATATTATATAAGGC
GCTTGCAGAACAACTAGAACAAGATATCAACAATGGATTTTTATTACCAGGTACTAAATTACCACCCCAACGTGAATTGG
CAGATTTCTTAGATGTTAATGTGAGTACTATCTCTAGAGCTTTTAAAATTTGTGAAAAAAAAGGTCTAATAAGTGGAGTT
ACAGGAAGTGGAACTTTTGTATCTTATGATACGCGTTCAAATCTATTCTTGATGTCCAGTAATAATAAAATTACATTTAT
TGAAATGGGCACAATGAATCCAGATTTCACACTAGAAGAAATGAATACTTTGTTTAAACACATAATTAAGGAAATAGATT
TTAAAACTATATTCCAATATGGACAAAGAGATGGTGCTAAATGGCAAAAAGAAGCTATTGCCAAATTAATTTATAAAGCT
GGGCTTGAAACTACATCAGATAGCTTACTTCCTGCAAGTGGTGGACAAAATGCAATTGTTGCTATTTTAGCTGGTTTGTT
TCAACATGGAGATAGAATAGGTGTAGACCCATTAACTTATCCTGGAATAAAGACAGCAGCTAAAATGCTTGGGATTCAAC
TAATTCCAATTAAACAAGAAGATAATGAGATTAGTGAAGAAGGACTATTATATGCTTGTAAAAATGAAAATATTAAAGGT
CTATACATAATACCAGATTATCAAAATCCAACTACACATATAATGTCACAAAATGGACGAAAAATGATTGCAAATATTGC
ATCTAAATACAATTTAATTGTTATTGAGGATGCTATTCATAGTTTACTTAATGAAACACATTTAAATCCAGTGGCTTCCT
ATCTGCCCAATCAAACAATTTATATTACGAGTTTATCAAAAATTATTGCACCTAGTTTACGGCTAGCATATATCTCTACA
CCTAAACAGTATCGAGAGGCATTATCAAGCGCATTATACAACATTAATCTATCTCAATCTTATTTTTTAACAGAAATTGC
TTATCGCATGATTACATCAGGTGAAGCCGATAAATTAATTAATGCACGCCGTAAATCTGCAAGAAGAAGAAACAAGATTA
TTAATCAATATTTATCTGGATATAATCTTTTGGGAAATGAAGAATGTATATTTAGATGGTTGATTCTACCTGATGGAATA
ATGGCAGAAAAATTTGAGATACAAGCACTTAAAGAAGGTGTACAGGTCTATGCTTCTGAACGTTTTGCTGTTGGAAAAGA
AAAACCAATTTCTGCAATAAGAATAGCTGTATGTGCTACAGAAAGTACAGAAGAACTTAAAGCTGGTTTGAGCGTATTAA
AAAGACTATTAGAAGAGAAAAAATAA

Upstream 100 bases:

>100_bases
AAACTAATAGAATTATTTCCTATCAGTTTTTATTTGTATCTTTAGAATTTATTGTTTTAGATAAAGAAAAAATCAAATTA
ATAATGTGAGGTGAAAACTT

Downstream 100 bases:

>100_bases
TTGTATTGCACACAATATTTTAATTGTGTGTATTTTTTTTTGTTGTTAAAATAAAATTACACCAGATAGTAATTAACTTA
TAGAGATTAATATGTATTAT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 461; Mature: 460

Protein sequence:

>461_residues
MPINSFENYPMNWKPKRPSKGQILYKALAEQLEQDINNGFLLPGTKLPPQRELADFLDVNVSTISRAFKICEKKGLISGV
TGSGTFVSYDTRSNLFLMSSNNKITFIEMGTMNPDFTLEEMNTLFKHIIKEIDFKTIFQYGQRDGAKWQKEAIAKLIYKA
GLETTSDSLLPASGGQNAIVAILAGLFQHGDRIGVDPLTYPGIKTAAKMLGIQLIPIKQEDNEISEEGLLYACKNENIKG
LYIIPDYQNPTTHIMSQNGRKMIANIASKYNLIVIEDAIHSLLNETHLNPVASYLPNQTIYITSLSKIIAPSLRLAYIST
PKQYREALSSALYNINLSQSYFLTEIAYRMITSGEADKLINARRKSARRRNKIINQYLSGYNLLGNEECIFRWLILPDGI
MAEKFEIQALKEGVQVYASERFAVGKEKPISAIRIAVCATESTEELKAGLSVLKRLLEEKK

Sequences:

>Translated_461_residues
MPINSFENYPMNWKPKRPSKGQILYKALAEQLEQDINNGFLLPGTKLPPQRELADFLDVNVSTISRAFKICEKKGLISGV
TGSGTFVSYDTRSNLFLMSSNNKITFIEMGTMNPDFTLEEMNTLFKHIIKEIDFKTIFQYGQRDGAKWQKEAIAKLIYKA
GLETTSDSLLPASGGQNAIVAILAGLFQHGDRIGVDPLTYPGIKTAAKMLGIQLIPIKQEDNEISEEGLLYACKNENIKG
LYIIPDYQNPTTHIMSQNGRKMIANIASKYNLIVIEDAIHSLLNETHLNPVASYLPNQTIYITSLSKIIAPSLRLAYIST
PKQYREALSSALYNINLSQSYFLTEIAYRMITSGEADKLINARRKSARRRNKIINQYLSGYNLLGNEECIFRWLILPDGI
MAEKFEIQALKEGVQVYASERFAVGKEKPISAIRIAVCATESTEELKAGLSVLKRLLEEKK
>Mature_460_residues
PINSFENYPMNWKPKRPSKGQILYKALAEQLEQDINNGFLLPGTKLPPQRELADFLDVNVSTISRAFKICEKKGLISGVT
GSGTFVSYDTRSNLFLMSSNNKITFIEMGTMNPDFTLEEMNTLFKHIIKEIDFKTIFQYGQRDGAKWQKEAIAKLIYKAG
LETTSDSLLPASGGQNAIVAILAGLFQHGDRIGVDPLTYPGIKTAAKMLGIQLIPIKQEDNEISEEGLLYACKNENIKGL
YIIPDYQNPTTHIMSQNGRKMIANIASKYNLIVIEDAIHSLLNETHLNPVASYLPNQTIYITSLSKIIAPSLRLAYISTP
KQYREALSSALYNINLSQSYFLTEIAYRMITSGEADKLINARRKSARRRNKIINQYLSGYNLLGNEECIFRWLILPDGIM
AEKFEIQALKEGVQVYASERFAVGKEKPISAIRIAVCATESTEELKAGLSVLKRLLEEKK

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=312, Percent_Identity=23.7179487179487, Blast_Score=69, Evalue=9e-12,
Organism=Homo sapiens, GI33469970, Length=312, Percent_Identity=23.7179487179487, Blast_Score=69, Evalue=9e-12,
Organism=Escherichia coli, GI1790797, Length=456, Percent_Identity=23.6842105263158, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI1787710, Length=433, Percent_Identity=21.0161662817552, Blast_Score=99, Evalue=6e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 51756; Mature: 51624

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPINSFENYPMNWKPKRPSKGQILYKALAEQLEQDINNGFLLPGTKLPPQRELADFLDVN
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHCCC
VSTISRAFKICEKKGLISGVTGSGTFVSYDTRSNLFLMSSNNKITFIEMGTMNPDFTLEE
HHHHHHHHHHHHHCCCEECCCCCCCEEEEECCCCEEEEECCCEEEEEEECCCCCCCCHHH
MNTLFKHIIKEIDFKTIFQYGQRDGAKWQKEAIAKLIYKAGLETTSDSLLPASGGQNAIV
HHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
AILAGLFQHGDRIGVDPLTYPGIKTAAKMLGIQLIPIKQEDNEISEEGLLYACKNENIKG
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCEEEEEECCCCCCCCCCCEEEEECCCCCCE
LYIIPDYQNPTTHIMSQNGRKMIANIASKYNLIVIEDAIHSLLNETHLNPVASYLPNQTI
EEEEECCCCCHHHHHCCCCHHHHHHHHHHCCEEEEHHHHHHHHHHHCCCHHHHHCCCCEE
YITSLSKIIAPSLRLAYISTPKQYREALSSALYNINLSQSYFLTEIAYRMITSGEADKLI
EEEEHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHH
NARRKSARRRNKIINQYLSGYNLLGNEECIFRWLILPDGIMAEKFEIQALKEGVQVYASE
HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
RFAVGKEKPISAIRIAVCATESTEELKAGLSVLKRLLEEKK
HHCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PINSFENYPMNWKPKRPSKGQILYKALAEQLEQDINNGFLLPGTKLPPQRELADFLDVN
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHCCC
VSTISRAFKICEKKGLISGVTGSGTFVSYDTRSNLFLMSSNNKITFIEMGTMNPDFTLEE
HHHHHHHHHHHHHCCCEECCCCCCCEEEEECCCCEEEEECCCEEEEEEECCCCCCCCHHH
MNTLFKHIIKEIDFKTIFQYGQRDGAKWQKEAIAKLIYKAGLETTSDSLLPASGGQNAIV
HHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
AILAGLFQHGDRIGVDPLTYPGIKTAAKMLGIQLIPIKQEDNEISEEGLLYACKNENIKG
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCEEEEEECCCCCCCCCCCEEEEECCCCCCE
LYIIPDYQNPTTHIMSQNGRKMIANIASKYNLIVIEDAIHSLLNETHLNPVASYLPNQTI
EEEEECCCCCHHHHHCCCCHHHHHHHHHHCCEEEEHHHHHHHHHHHCCCHHHHHCCCCEE
YITSLSKIIAPSLRLAYISTPKQYREALSSALYNINLSQSYFLTEIAYRMITSGEADKLI
EEEEHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHH
NARRKSARRRNKIINQYLSGYNLLGNEECIFRWLILPDGIMAEKFEIQALKEGVQVYASE
HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
RFAVGKEKPISAIRIAVCATESTEELKAGLSVLKRLLEEKK
HHCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]