| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126699533
Identifier: 126699533
GI number: 126699533
Start: 2222429
End: 2222980
Strand: Direct
Name: 126699533
Synonym: CD1923
Alternate gene names: NA
Gene position: 2222429-2222980 (Clockwise)
Preceding gene: 126699532
Following gene: 126699534
Centisome position: 51.8
GC content: 27.17
Gene sequence:
>552_bases ATGAATAAAAGTATAGGAGCTATAGAGTTTAAAAGCATTGCTAAAGGTATAGAAGTATCCAATGAAATGATAAAGAAATC TTCAGTTGATGTATTGTACTTAAAAAGTATTTGCCCAGGTAAATTTCTAATAATAGTAGGTGGAGAAACTTCTTATATAA ATGAATGTGTAGATTATGGAATAAAACTTGGAGAAGGATATATTGTAGATAACTTCGTAATAAATGCAATTTCACAAGAA ATATTAGATGGATTTAAAAATAAGTATCAAAAGCTAGATAGTATAGTCTCTATAGGCGTTGTTGAAAGTAGTAAAGTATG CGCTGGAATAAAAATGCTTGATAAGACTTTAAAATCTGGCGACTTAGTATTAGTAAAACTTCAATTATCTTTTGCTATAG GTGGCAAATTAGTATATATAGTAGCAGGAGATTTAAGTAGTTTAGAATATGCATTAAAAGAAAGTGAAAATGTAGTAAGA GAAAAAGAAGTAATATATAAGACTGTAATACCATCAGTAGACAGTCAAATAATAAAAAGTCTAATAAAATAA
Upstream 100 bases:
>100_bases CTTATATCCAAAGGTTCCTCAGCTAGAGAGTCGATTGAAAAATCTCATGTTCCGGTAGATGCAACTATAGTTGGAGTAGT CGATTCGTTTGAGGTGTTTG
Downstream 100 bases:
>100_bases TGGGGGGAATTATGAGTATAAACGAAATTATAATCTATGTAATGGTAGTCTTCATGGTACTTGGAGCTATAGATAAATGT ATAGGTAACAAATTTGGTCT
Product: ethanolamine/propanediol utilization protein
Products: NA
Alternate protein names: BMC Domain Protein; Propanediol Utilization Protein; Propanediol Utilization Protein PduT; Propanediol Utilization Protein Polyhedral Bodies; PduT Protein; Propanediol Utilization Polyhedral Bodies PduT; Ethanolamine/Propanediol Utilization Protein; Ethanolamine Utilization Protein; Propanediol Utilization Polyhedral Body Protein PduT; Microcompartment Shellprotein; Propanediol Utilization Polyhedral Bodies; Ethanolamine Utilization Protein EutM; Propanediol Utilization Protein-Like
Number of amino acids: Translated: 183; Mature: 183
Protein sequence:
>183_residues MNKSIGAIEFKSIAKGIEVSNEMIKKSSVDVLYLKSICPGKFLIIVGGETSYINECVDYGIKLGEGYIVDNFVINAISQE ILDGFKNKYQKLDSIVSIGVVESSKVCAGIKMLDKTLKSGDLVLVKLQLSFAIGGKLVYIVAGDLSSLEYALKESENVVR EKEVIYKTVIPSVDSQIIKSLIK
Sequences:
>Translated_183_residues MNKSIGAIEFKSIAKGIEVSNEMIKKSSVDVLYLKSICPGKFLIIVGGETSYINECVDYGIKLGEGYIVDNFVINAISQE ILDGFKNKYQKLDSIVSIGVVESSKVCAGIKMLDKTLKSGDLVLVKLQLSFAIGGKLVYIVAGDLSSLEYALKESENVVR EKEVIYKTVIPSVDSQIIKSLIK >Mature_183_residues MNKSIGAIEFKSIAKGIEVSNEMIKKSSVDVLYLKSICPGKFLIIVGGETSYINECVDYGIKLGEGYIVDNFVINAISQE ILDGFKNKYQKLDSIVSIGVVESSKVCAGIKMLDKTLKSGDLVLVKLQLSFAIGGKLVYIVAGDLSSLEYALKESENVVR EKEVIYKTVIPSVDSQIIKSLIK
Specific function: Unknown
COG id: COG4577
COG function: function code QC; Carbon dioxide concentrating mechanism/carboxysome shell protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19979; Mature: 19979
Theoretical pI: Translated: 7.99; Mature: 7.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKSIGAIEFKSIAKGIEVSNEMIKKSSVDVLYLKSICPGKFLIIVGGETSYINECVDYG CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCCHHHHHHHHHCC IKLGEGYIVDNFVINAISQEILDGFKNKYQKLDSIVSIGVVESSKVCAGIKMLDKTLKSG EECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC DLVLVKLQLSFAIGGKLVYIVAGDLSSLEYALKESENVVREKEVIYKTVIPSVDSQIIKS CEEEEEEEEEEEECCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH LIK HHC >Mature Secondary Structure MNKSIGAIEFKSIAKGIEVSNEMIKKSSVDVLYLKSICPGKFLIIVGGETSYINECVDYG CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCCHHHHHHHHHCC IKLGEGYIVDNFVINAISQEILDGFKNKYQKLDSIVSIGVVESSKVCAGIKMLDKTLKSG EECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC DLVLVKLQLSFAIGGKLVYIVAGDLSSLEYALKESENVVREKEVIYKTVIPSVDSQIIKS CEEEEEEEEEEEECCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH LIK HHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA