| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
Click here to switch to the map view.
The map label for this gene is 126699511
Identifier: 126699511
GI number: 126699511
Start: 2203327
End: 2203836
Strand: Direct
Name: 126699511
Synonym: CD1901
Alternate gene names: NA
Gene position: 2203327-2203836 (Clockwise)
Preceding gene: 126699506
Following gene: 126699513
Centisome position: 51.36
GC content: 34.31
Gene sequence:
>510_bases ATGTTAAGCGAAAACATTAAAACAATCAGGAAGTCAAAAGGACTTTCACAACAAGAACTTGCTATAAAACTGAATGTAGT GCGACAAACAATATCTAAATGGGAACAAGGACTGTCGGTTCCCGATTCTGATATGTTGATTTCCATATCAGAGGTGCTTG AAACGCCCGTAAGCACTTTACTTGGAGAAACTATTGTTGAGTCGGAAGTTGATAACTTAAAAGTGATTTCTGAAAAATTA GAGATTATAAACTTGCAACTTGCACAAAGAAAAAACATGAGAAGAAAAATGTTTCATTGGTTATTTATTTTATTATGTGC AGTCATATTAATAGTTTTTGTGGTCTTAGGGAGACTAAATAGTCCTTACTTGGATTGGAATTATACCGACCCTGAAACCG CTGTTTTTGGAGTAGCTTTTCATGCTTTTGAGTGGCTATTTGTCAGATTAGTACCGATTGTCCTTATAGGAGCAATTATT GGAATCTTTTTGACACGTAAGAAAATATGA
Upstream 100 bases:
>100_bases AAAGAAGAAATTTACTTGAATGTTAAAATGCGTTGCTTGAAGCAATGGGCAGTTTTGCCTATAATATCGGTAACAACTGA AAGAAAGGTGGTTAGCCCTA
Downstream 100 bases:
>100_bases AGTAACTCTGCTTTTTATAATACAGCAAGCGTTCCTTAAAAGCGTCATTCTACATGGCAATCGAGGACGACTATGTAAGG AAGAACCTTTTTGATTTCCA
Product: phage repressor
Products: NA
Alternate protein names: Transcriptional Regulator; Phage Repressor
Number of amino acids: Translated: 169; Mature: 169
Protein sequence:
>169_residues MLSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLLGETIVESEVDNLKVISEKL EIINLQLAQRKNMRRKMFHWLFILLCAVILIVFVVLGRLNSPYLDWNYTDPETAVFGVAFHAFEWLFVRLVPIVLIGAII GIFLTRKKI
Sequences:
>Translated_169_residues MLSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLLGETIVESEVDNLKVISEKL EIINLQLAQRKNMRRKMFHWLFILLCAVILIVFVVLGRLNSPYLDWNYTDPETAVFGVAFHAFEWLFVRLVPIVLIGAII GIFLTRKKI >Mature_169_residues MLSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLLGETIVESEVDNLKVISEKL EIINLQLAQRKNMRRKMFHWLFILLCAVILIVFVVLGRLNSPYLDWNYTDPETAVFGVAFHAFEWLFVRLVPIVLIGAII GIFLTRKKI
Specific function: Unknown
COG id: COG1396
COG function: function code K; Predicted transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19308; Mature: 19308
Theoretical pI: Translated: 9.13; Mature: 9.13
Prosite motif: PS50943 HTH_CROC1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEHHHHHHHHHHHH LGETIVESEVDNLKVISEKLEIINLQLAQRKNMRRKMFHWLFILLCAVILIVFVVLGRLN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC SPYLDWNYTDPETAVFGVAFHAFEWLFVRLVPIVLIGAIIGIFLTRKKI CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEHHHHHHHHHHHH LGETIVESEVDNLKVISEKLEIINLQLAQRKNMRRKMFHWLFILLCAVILIVFVVLGRLN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC SPYLDWNYTDPETAVFGVAFHAFEWLFVRLVPIVLIGAIIGIFLTRKKI CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA