| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126699474
Identifier: 126699474
GI number: 126699474
Start: 2164829
End: 2165506
Strand: Direct
Name: 126699474
Synonym: CD1863
Alternate gene names: NA
Gene position: 2164829-2165506 (Clockwise)
Preceding gene: 126699473
Following gene: 126699475
Centisome position: 50.46
GC content: 34.81
Gene sequence:
>678_bases ATGAAAGGAGATAAAAACATGGATTACAAAACAATGAGAAATCAAATAGAAGATATGGTAAATGATAACCATAAGGACTT TGTAAAGGCGATTATAAGCATGGAAAAAGGTATCAATGATGAAAGTGCTTTAGACAAGCTCTATGACGCTTATATGGACA ATGACAGCCTTAATTTACTGCATGAGGAATTTGACTATATGATTGAGGATTTAAGAGAACAGGGGCAGATAAAAGACCTG CCTTATGTTCAGGAAGAAAAGGATAATCTTATCAATATTGTCGGAAATATTGTTGGAGAGGTCGATGTAGTTGAAAGAGA AAACAAGAATGGAGACTCCTTTAAGGTGGCAAATTTCTCTGTAGTATCCAAAGATGATGAAGGAAATAAGGTATATCATA ATTGCTCTGCCTATGGAGAAAAGAGTGATATTCCAAAGGGCTTTAAGCAAGGAGATTTTGTTAAGCTCTTTGGACAAATC AGAACCTCAATTGATGATAATGGTAAGGAGCATAGCAATGTAAGGATACTTTCTTCAAAGCTTTTAAAGGCAAAAGAACA AATGAAAGGACAGGATGAAAAGAAAGGATCTGTACTTGGAGCTATCAAAAAATATCAGGCTGAAGATAAGGAAAAACCGA AAGAAAAGAAAGAAGCAAGCAAAGAAGCTGAGAGATAA
Upstream 100 bases:
>100_bases TCAGATACGAGCTTATCAAAATGAAAGTAAAACAGAAGAAAAACAAAAAACAAAAGAACAGGAAATTTTAAGATAAGGGG AGGGCAACCTCTCTTTTGCC
Downstream 100 bases:
>100_bases ATTTACGGTCGGTGTGGTCTTAGGACTGCACCGGCTCTTTTTTATTTATGCAAGTTCGATTAAAGAGAATATATTTATGA AAAAAGTGTATTTTGTGGTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 225; Mature: 225
Protein sequence:
>225_residues MKGDKNMDYKTMRNQIEDMVNDNHKDFVKAIISMEKGINDESALDKLYDAYMDNDSLNLLHEEFDYMIEDLREQGQIKDL PYVQEEKDNLINIVGNIVGEVDVVERENKNGDSFKVANFSVVSKDDEGNKVYHNCSAYGEKSDIPKGFKQGDFVKLFGQI RTSIDDNGKEHSNVRILSSKLLKAKEQMKGQDEKKGSVLGAIKKYQAEDKEKPKEKKEASKEAER
Sequences:
>Translated_225_residues MKGDKNMDYKTMRNQIEDMVNDNHKDFVKAIISMEKGINDESALDKLYDAYMDNDSLNLLHEEFDYMIEDLREQGQIKDL PYVQEEKDNLINIVGNIVGEVDVVERENKNGDSFKVANFSVVSKDDEGNKVYHNCSAYGEKSDIPKGFKQGDFVKLFGQI RTSIDDNGKEHSNVRILSSKLLKAKEQMKGQDEKKGSVLGAIKKYQAEDKEKPKEKKEASKEAER >Mature_225_residues MKGDKNMDYKTMRNQIEDMVNDNHKDFVKAIISMEKGINDESALDKLYDAYMDNDSLNLLHEEFDYMIEDLREQGQIKDL PYVQEEKDNLINIVGNIVGEVDVVERENKNGDSFKVANFSVVSKDDEGNKVYHNCSAYGEKSDIPKGFKQGDFVKLFGQI RTSIDDNGKEHSNVRILSSKLLKAKEQMKGQDEKKGSVLGAIKKYQAEDKEKPKEKKEASKEAER
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25740; Mature: 25740
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: PS50935 SSB
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKGDKNMDYKTMRNQIEDMVNDNHKDFVKAIISMEKGINDESALDKLYDAYMDNDSLNLL CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHH HEEFDYMIEDLREQGQIKDLPYVQEEKDNLINIVGNIVGEVDVVERENKNGDSFKVANFS HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEEEEE VVSKDDEGNKVYHNCSAYGEKSDIPKGFKQGDFVKLFGQIRTSIDDNGKEHSNVRILSSK EEECCCCCCCEEHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHH LLKAKEQMKGQDEKKGSVLGAIKKYQAEDKEKPKEKKEASKEAER HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC >Mature Secondary Structure MKGDKNMDYKTMRNQIEDMVNDNHKDFVKAIISMEKGINDESALDKLYDAYMDNDSLNLL CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHH HEEFDYMIEDLREQGQIKDLPYVQEEKDNLINIVGNIVGEVDVVERENKNGDSFKVANFS HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEEEEE VVSKDDEGNKVYHNCSAYGEKSDIPKGFKQGDFVKLFGQIRTSIDDNGKEHSNVRILSSK EEECCCCCCCEEHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHH LLKAKEQMKGQDEKKGSVLGAIKKYQAEDKEKPKEKKEASKEAER HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA