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The map label for this gene is ydeE [H]

Identifier: 126699459

GI number: 126699459

Start: 2142169

End: 2143035

Strand: Direct

Name: ydeE [H]

Synonym: CD1850

Alternate gene names: 126699459

Gene position: 2142169-2143035 (Clockwise)

Preceding gene: 126699458

Following gene: 126699460

Centisome position: 49.93

GC content: 32.76

Gene sequence:

>867_bases
ATGAATATTATCAAGTCATTTAACAGTACAATTGATTATCTTGAAACAGTTCTTGATGATGAAATTGATGAAAAGAAAGT
AACTAGAATATCCGGATATTCTTATTCGATGTTCAGTCGCTTGTTTTCTATTCTAACTGAAATGACACTTTCAGAATATT
TAAGAAGCAGAAGATTAACGGAAGCTGCGATTATATTAAGAGATACAGATGAAAAAATTATTGATGTTGCATTCAAATTT
GGATATGAGTCATCAGATTCGTTTGGGACTGCTTTTAAGAATTTTCATGGATTTACTCCTTCTGAGGTGAGAATTGGAAA
ACCTTTTAAATTAGTTTCCAGGGTGCAATTAGCATTAAGTGTAAGAGGAGGAAGAAGTATGAATATAAGGATTCAAAAGA
AAAAAGCATTTACAGTTGCAGGTGTAAATCAACAAAACATCAATTCATCAATATGTGCAAGCCTATGGCAAAAACTATTT
TCAAAGGTATCTCATGAAGAAATGTTAAACTTAGGGACCGGAGAAGTTGTAGGAGTATGCCATGATATATTAAGTCTTGA
TAATCATGATGTTTTAGATAGTAACACGATAAATTATATGGCAGGATATATTGTTACAGATGTAGATAAGGCAAGAAGTA
TGGGACTAGATATTTTAGAAATTGGAGAAACAGAGTATGCGGTTGTAGAGTTAACAGGTAGTGTTCCAGAGTGTATTCAT
AACGGTTGGAAGTATGCGATGGAAGTGTTCTTTCCCGAGCATGGATATGTTCATTCAGGAAAGCCGGACTTTGAATATTA
TTATGAAGGAGATATGTATAGTAAAGACTACAAAATGGAACTTTGGATTCCTGTATGTAAATCTTAA

Upstream 100 bases:

>100_bases
TTTTATGTATGAAACCTATAATATTTGTACTAATACTGTGGGGTAGGAAAAGAAAACTTCCTATATACTAAAATCAACCG
AAAGAAAGGAGGAAATTAGA

Downstream 100 bases:

>100_bases
CAAATTTCAGTCTATAGTTTTAAAACAAAATATATAAAATACAAGGTGATAGAAAGTAAAAGCTATCGCCTTTTTTATGT
AAAAATTTAAGGAGATAGAA

Product: AraC family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MNIIKSFNSTIDYLETVLDDEIDEKKVTRISGYSYSMFSRLFSILTEMTLSEYLRSRRLTEAAIILRDTDEKIIDVAFKF
GYESSDSFGTAFKNFHGFTPSEVRIGKPFKLVSRVQLALSVRGGRSMNIRIQKKKAFTVAGVNQQNINSSICASLWQKLF
SKVSHEEMLNLGTGEVVGVCHDILSLDNHDVLDSNTINYMAGYIVTDVDKARSMGLDILEIGETEYAVVELTGSVPECIH
NGWKYAMEVFFPEHGYVHSGKPDFEYYYEGDMYSKDYKMELWIPVCKS

Sequences:

>Translated_288_residues
MNIIKSFNSTIDYLETVLDDEIDEKKVTRISGYSYSMFSRLFSILTEMTLSEYLRSRRLTEAAIILRDTDEKIIDVAFKF
GYESSDSFGTAFKNFHGFTPSEVRIGKPFKLVSRVQLALSVRGGRSMNIRIQKKKAFTVAGVNQQNINSSICASLWQKLF
SKVSHEEMLNLGTGEVVGVCHDILSLDNHDVLDSNTINYMAGYIVTDVDKARSMGLDILEIGETEYAVVELTGSVPECIH
NGWKYAMEVFFPEHGYVHSGKPDFEYYYEGDMYSKDYKMELWIPVCKS
>Mature_288_residues
MNIIKSFNSTIDYLETVLDDEIDEKKVTRISGYSYSMFSRLFSILTEMTLSEYLRSRRLTEAAIILRDTDEKIIDVAFKF
GYESSDSFGTAFKNFHGFTPSEVRIGKPFKLVSRVQLALSVRGGRSMNIRIQKKKAFTVAGVNQQNINSSICASLWQKLF
SKVSHEEMLNLGTGEVVGVCHDILSLDNHDVLDSNTINYMAGYIVTDVDKARSMGLDILEIGETEYAVVELTGSVPECIH
NGWKYAMEVFFPEHGYVHSGKPDFEYYYEGDMYSKDYKMELWIPVCKS

Specific function: May Be A Transcriptional Activator Of Genes Involved In The Multiple Antibiotic Resistance (Mar) Phenotype. It Can Also Activate Genes Such As Soda, Zwf And Micf. [C]

COG id: COG3708

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081928, Length=100, Percent_Identity=33, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790497, Length=104, Percent_Identity=34.6153846153846, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32783; Mature: 32783

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIIKSFNSTIDYLETVLDDEIDEKKVTRISGYSYSMFSRLFSILTEMTLSEYLRSRRLT
CCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
EAAIILRDTDEKIIDVAFKFGYESSDSFGTAFKNFHGFTPSEVRIGKPFKLVSRVQLALS
CEEEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHEE
VRGGRSMNIRIQKKKAFTVAGVNQQNINSSICASLWQKLFSKVSHEEMLNLGTGEVVGVC
ECCCCEEEEEEEECCEEEEECCCHHCCCHHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHH
HDILSLDNHDVLDSNTINYMAGYIVTDVDKARSMGLDILEIGETEYAVVELTGSVPECIH
HHHHHCCCCCCCCCCCHHHHHHHHEECHHHHHHCCCCEEEECCCCEEEEEECCCCHHHHH
NGWKYAMEVFFPEHGYVHSGKPDFEYYYEGDMYSKDYKMELWIPVCKS
HHHHHHHHEECCCCCEECCCCCCCEEEECCCEECCCEEEEEEEEECCC
>Mature Secondary Structure
MNIIKSFNSTIDYLETVLDDEIDEKKVTRISGYSYSMFSRLFSILTEMTLSEYLRSRRLT
CCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
EAAIILRDTDEKIIDVAFKFGYESSDSFGTAFKNFHGFTPSEVRIGKPFKLVSRVQLALS
CEEEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHEE
VRGGRSMNIRIQKKKAFTVAGVNQQNINSSICASLWQKLFSKVSHEEMLNLGTGEVVGVC
ECCCCEEEEEEEECCEEEEECCCHHCCCHHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHH
HDILSLDNHDVLDSNTINYMAGYIVTDVDKARSMGLDILEIGETEYAVVELTGSVPECIH
HHHHHCCCCCCCCCCCHHHHHHHHEECHHHHHHCCCCEEEECCCCEEEEEECCCCHHHHH
NGWKYAMEVFFPEHGYVHSGKPDFEYYYEGDMYSKDYKMELWIPVCKS
HHHHHHHHEECCCCCEECCCCCCCEEEECCCEECCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]