| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is ytfP [H]
Identifier: 126699423
GI number: 126699423
Start: 2097550
End: 2098803
Strand: Direct
Name: ytfP [H]
Synonym: CD1815
Alternate gene names: 126699423
Gene position: 2097550-2098803 (Clockwise)
Preceding gene: 126699422
Following gene: 126699424
Centisome position: 48.89
GC content: 28.15
Gene sequence:
>1254_bases ATGAGTAAAGTTATAGTAGTTGGTGGAGGAGCTTCTGGAATGATGGCAGCTTTGTCAGCTTCAAAAAACAATAATGAAGT AATATTAGTTGAGAGAAATGGAGAATTAGGAAGAAAACTTAGGGCAACTGGTGGCGGTAGATGCAATTTTACCAATAATA GAGAGATAGAAGATTTTTTTGATAAAGTTGTCAGTAATAAAAAATTTCTCTATAGTAGTTTTTATACATTTACAAATAAA GACCTTATTTCGTATTTTGAAAGTAGAAATTTGGAATATAAGATTGAAGAAGAAAATGACCACAAAGTATACACTAAAAA TGATAAATCTATAGAAGTAATAGAAGTATTAAATAAAGATTTACTCAATCACAATGTAAAGATAATGTATAATAAGAAAG TTATAGATATTATAACTGAAGAAATTGCTCTAAAAGATGATTCTAATAAGGACAAGTCAAAGTATCTAATAAAAGGGATT ATTTTAGATAATGGAGATAAAATACTAGGAGACAAGGTTATTATATCAACTGGAGGAGTGAGTTATTCAAAGACGGGTTC AGATGGTTCAATGTATAAGATTCTTAAAAAGCATGGACATACATTAAACAAACTATATCCTGCTTTAGTTCCACTTACAA TAGAGGAAAAATGGATTAAAGATTTACAAGGAATATCCATGAAGAATGTGGAAATATCTTGTAAGATTAAGAAAAGGAAA ATATCAAAATCTGGAGACATGCTATTTGCCCATTTTGGGATAACAGGACCTTGTGTTCTTATAATGTCTTCTTATATTAA CAAGATTATTGAAAAGGAAAAGGTAGAATTAAATATAGATTTCTTACCAAATTTAAGTACTGATGAAATCTCTAGTATAA TCAGAGCATTTCCAAATAAAAATGTTCTAAATAATCTTAAGCAAATACTACCTCAAAATTTCTTAAAAGAGATTTTTTCT CTATTATCTTTAGTTGATAAAAAGGCAAGTGATTTGTCTAAGGCAGATGAAATTAGAATTATTGAGTATATAAAAAATAT GAAGCTAACTTGTAATGGGACTACAGGTATAAACACTGGTATGGTTACTTCTGGTGGTATTTCAGTTAAAGAAATTAATT CTTCTACTATGGAATCTAAATTAGTTAAGAACTTATTTTTTACAGGTGAAGTAATTGATATAGATGCAGAAACTGGTGGA TATAATTTACAAATAGCATTTTCAACTGGATATCTTGCGGGTATAAGTGTATAA
Upstream 100 bases:
>100_bases GGCCTGTTATAGTAAAAATGAATGATACAAGTCATATAAAAAATCATGTAAAGATAAATAATTCTGCACTGGAGTAGGAA TCAATTATAAGGAGAAATTT
Downstream 100 bases:
>100_bases ATATAATTTTTTAATAATTAAATATGAATAAATAGAGGTGTATATATGGGTAATTTAGTTATAGCTGTAGATGGTCCAGC AGGAGCTGGAAAAAGTACAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 417; Mature: 416
Protein sequence:
>417_residues MSKVIVVGGGASGMMAALSASKNNNEVILVERNGELGRKLRATGGGRCNFTNNREIEDFFDKVVSNKKFLYSSFYTFTNK DLISYFESRNLEYKIEEENDHKVYTKNDKSIEVIEVLNKDLLNHNVKIMYNKKVIDIITEEIALKDDSNKDKSKYLIKGI ILDNGDKILGDKVIISTGGVSYSKTGSDGSMYKILKKHGHTLNKLYPALVPLTIEEKWIKDLQGISMKNVEISCKIKKRK ISKSGDMLFAHFGITGPCVLIMSSYINKIIEKEKVELNIDFLPNLSTDEISSIIRAFPNKNVLNNLKQILPQNFLKEIFS LLSLVDKKASDLSKADEIRIIEYIKNMKLTCNGTTGINTGMVTSGGISVKEINSSTMESKLVKNLFFTGEVIDIDAETGG YNLQIAFSTGYLAGISV
Sequences:
>Translated_417_residues MSKVIVVGGGASGMMAALSASKNNNEVILVERNGELGRKLRATGGGRCNFTNNREIEDFFDKVVSNKKFLYSSFYTFTNK DLISYFESRNLEYKIEEENDHKVYTKNDKSIEVIEVLNKDLLNHNVKIMYNKKVIDIITEEIALKDDSNKDKSKYLIKGI ILDNGDKILGDKVIISTGGVSYSKTGSDGSMYKILKKHGHTLNKLYPALVPLTIEEKWIKDLQGISMKNVEISCKIKKRK ISKSGDMLFAHFGITGPCVLIMSSYINKIIEKEKVELNIDFLPNLSTDEISSIIRAFPNKNVLNNLKQILPQNFLKEIFS LLSLVDKKASDLSKADEIRIIEYIKNMKLTCNGTTGINTGMVTSGGISVKEINSSTMESKLVKNLFFTGEVIDIDAETGG YNLQIAFSTGYLAGISV >Mature_416_residues SKVIVVGGGASGMMAALSASKNNNEVILVERNGELGRKLRATGGGRCNFTNNREIEDFFDKVVSNKKFLYSSFYTFTNKD LISYFESRNLEYKIEEENDHKVYTKNDKSIEVIEVLNKDLLNHNVKIMYNKKVIDIITEEIALKDDSNKDKSKYLIKGII LDNGDKILGDKVIISTGGVSYSKTGSDGSMYKILKKHGHTLNKLYPALVPLTIEEKWIKDLQGISMKNVEISCKIKKRKI SKSGDMLFAHFGITGPCVLIMSSYINKIIEKEKVELNIDFLPNLSTDEISSIIRAFPNKNVLNNLKQILPQNFLKEIFSL LSLVDKKASDLSKADEIRIIEYIKNMKLTCNGTTGINTGMVTSGGISVKEINSSTMESKLVKNLFFTGEVIDIDAETGGY NLQIAFSTGYLAGISV
Specific function: Unknown
COG id: COG2081
COG function: function code R; Predicted flavoproteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI2367234, Length=401, Percent_Identity=27.6807980049875, Blast_Score=158, Evalue=5e-40,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004792 - InterPro: IPR013027 [H]
Pfam domain/function: PF03486 HI0933_like [H]
EC number: NA
Molecular weight: Translated: 46514; Mature: 46383
Theoretical pI: Translated: 9.21; Mature: 9.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKVIVVGGGASGMMAALSASKNNNEVILVERNGELGRKLRATGGGRCNFTNNREIEDFF CCEEEEEECCCHHHHHHHCCCCCCCEEEEEECCCCCCCEEECCCCCEECCCCCCCHHHHH DKVVSNKKFLYSSFYTFTNKDLISYFESRNLEYKIEEENDHKVYTKNDKSIEVIEVLNKD HHHHCCCEEEEEHHHHHCCHHHHHHHHHCCCEEEEECCCCCEEEECCCCCCHHHHHHHHH LLNHNVKIMYNKKVIDIITEEIALKDDSNKDKSKYLIKGIILDNGDKILGDKVIISTGGV HHCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCEEECCEEEEEECCC SYSKTGSDGSMYKILKKHGHTLNKLYPALVPLTIEEKWIKDLQGISMKNVEISCKIKKRK EECCCCCCCHHHHHHHHCCCHHHHHHHHHEEEEECHHHHHHHCCCEEECEEEEEEEEEEE ISKSGDMLFAHFGITGPCVLIMSSYINKIIEKEKVELNIDFLPNLSTDEISSIIRAFPNK CCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHCCCC NVLNNLKQILPQNFLKEIFSLLSLVDKKASDLSKADEIRIIEYIKNMKLTCNGTTGINTG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCEEEECCCCCCCCC MVTSGGISVKEINSSTMESKLVKNLFFTGEVIDIDAETGGYNLQIAFSTGYLAGISV CEECCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECCEEEECCC >Mature Secondary Structure SKVIVVGGGASGMMAALSASKNNNEVILVERNGELGRKLRATGGGRCNFTNNREIEDFF CEEEEEECCCHHHHHHHCCCCCCCEEEEEECCCCCCCEEECCCCCEECCCCCCCHHHHH DKVVSNKKFLYSSFYTFTNKDLISYFESRNLEYKIEEENDHKVYTKNDKSIEVIEVLNKD HHHHCCCEEEEEHHHHHCCHHHHHHHHHCCCEEEEECCCCCEEEECCCCCCHHHHHHHHH LLNHNVKIMYNKKVIDIITEEIALKDDSNKDKSKYLIKGIILDNGDKILGDKVIISTGGV HHCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCEEECCEEEEEECCC SYSKTGSDGSMYKILKKHGHTLNKLYPALVPLTIEEKWIKDLQGISMKNVEISCKIKKRK EECCCCCCCHHHHHHHHCCCHHHHHHHHHEEEEECHHHHHHHCCCEEECEEEEEEEEEEE ISKSGDMLFAHFGITGPCVLIMSSYINKIIEKEKVELNIDFLPNLSTDEISSIIRAFPNK CCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHCCCC NVLNNLKQILPQNFLKEIFSLLSLVDKKASDLSKADEIRIIEYIKNMKLTCNGTTGINTG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCEEEECCCCCCCCC MVTSGGISVKEINSSTMESKLVKNLFFTGEVIDIDAETGGYNLQIAFSTGYLAGISV CEECCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377 [H]