| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126699418
Identifier: 126699418
GI number: 126699418
Start: 2093917
End: 2094294
Strand: Direct
Name: 126699418
Synonym: CD1810
Alternate gene names: NA
Gene position: 2093917-2094294 (Clockwise)
Preceding gene: 126699417
Following gene: 126699419
Centisome position: 48.81
GC content: 26.72
Gene sequence:
>378_bases ATGACAATTTCAAAAATACCACAAGCAGAATTAAAAGTTATGAAGTTTATTTGGGAAAAAAATGATACAGTAACATCAAA AGAAACTATTGAAGCTATGGAACGAAAATATGGTTGGAAACAAACAACTACATTGACACTTTTATCAAGACTTGTTAAAA AACATTTTTTAAGTGCAGAAAAAATAGATAGATACACTCATTATACAATAGTTGTTGGACATAAGGAGTATTTAAGTGTT GAGACAAAAGATTTTTTAAGCAATATACACGACAATTCTTTACAGAGTTTAATTTCAGCACTACATGATGATGAAGTTGT TGATAAAGATATGTTGGATTTATTTGAAAGTCATTTTAAAAATTTAGAAGAAGAGTAA
Upstream 100 bases:
>100_bases TGGTAAAAATTGGAAAATATTTTTATCGACAAAATCTTTGACTTAAAAACTATATTGCGATAGTATTAATTTAATAAAAG TTTGAGAGGGGCGTAAGGTT
Downstream 100 bases:
>100_bases TTATATCAGGATAGAACTCTAAGAATTTAATTAATCTATGGCTGAAAACCATAAATGGTATTATTTAATCAGCTACTCAC TATTCATAAAGTAATATTAA
Product: regulatory protein
Products: NA
Alternate protein names: Transcriptional Repressor CopY Family; Penicillinase Repressor; Transcriptional Regulator; CopY Family Transcriptional Regulator; Beta-Lactamase Repressor; Phage Regulatory Protein; Transcriptional Regulator BlaI/MecI/CopY Family; Transcriptional Repressor
Number of amino acids: Translated: 125; Mature: 124
Protein sequence:
>125_residues MTISKIPQAELKVMKFIWEKNDTVTSKETIEAMERKYGWKQTTTLTLLSRLVKKHFLSAEKIDRYTHYTIVVGHKEYLSV ETKDFLSNIHDNSLQSLISALHDDEVVDKDMLDLFESHFKNLEEE
Sequences:
>Translated_125_residues MTISKIPQAELKVMKFIWEKNDTVTSKETIEAMERKYGWKQTTTLTLLSRLVKKHFLSAEKIDRYTHYTIVVGHKEYLSV ETKDFLSNIHDNSLQSLISALHDDEVVDKDMLDLFESHFKNLEEE >Mature_124_residues TISKIPQAELKVMKFIWEKNDTVTSKETIEAMERKYGWKQTTTLTLLSRLVKKHFLSAEKIDRYTHYTIVVGHKEYLSVE TKDFLSNIHDNSLQSLISALHDDEVVDKDMLDLFESHFKNLEEE
Specific function: Unknown
COG id: COG3682
COG function: function code K; Predicted transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14706; Mature: 14575
Theoretical pI: Translated: 5.93; Mature: 5.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTISKIPQAELKVMKFIWEKNDTVTSKETIEAMERKYGWKQTTTLTLLSRLVKKHFLSAE CCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHH KIDRYTHYTIVVGHKEYLSVETKDFLSNIHDNSLQSLISALHDDEVVDKDMLDLFESHFK HHHHHHHEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH NLEEE HCCCC >Mature Secondary Structure TISKIPQAELKVMKFIWEKNDTVTSKETIEAMERKYGWKQTTTLTLLSRLVKKHFLSAE CCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHH KIDRYTHYTIVVGHKEYLSVETKDFLSNIHDNSLQSLISALHDDEVVDKDMLDLFESHFK HHHHHHHEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH NLEEE HCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA